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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Nasopalpebral lipoma-coloboma syndrome Small cell lung carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
ZDBF2(3)
0.011 1.000 5.91e-3 7.12e-3 ✓ sig. Cluster 3 →
Corticobasal degeneration Costello syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOS1(3)
0.050 0.143 5.90e-3 7.11e-3 ✓ sig. Cluster 42 →
Optic neuritis Sensory peripheral neuropathy
1 gene
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ATP7B(1)
0.050 0.143 5.90e-3 7.11e-3 ✓ sig. —
Epidermodysplasia verruciformis Thyroid gland neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
RHOH(4)
0.050 0.143 5.90e-3 7.11e-3 ✓ sig. —
Dowling degos disease Junctional epidermolysis bullosa
1 gene
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1 of 1 corroborated by 2+ sources
KRT5(6)
0.043 0.200 5.83e-3 7.05e-3 ✓ sig. —
Congenital heart malformation Semilobar holoprosencephaly
1 gene
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1 of 1 corroborated by 2+ sources
FOXH1(3)
0.043 0.200 5.83e-3 7.05e-3 ✓ sig. Cluster 96 →
Cerebellar atrophy Marinesco-sjogren syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SIL1(6)
0.030 0.333 5.83e-3 7.05e-3 ✓ sig. —
Fetal erythroblastosis Thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
FCGR2A(2)
0.021 0.500 5.84e-3 7.05e-3 ✓ sig. Cluster 55 →
Bronchopulmonary dysplasia Chromosome 16p11.2 deletion syndrome
1 gene
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SFTPA1(1)
0.021 0.500 5.84e-3 7.05e-3 ✓ sig. —
Non-immune hydrops fetalis Noonan syndrome-like disorder with loose anagen hair
1 gene
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1 of 1 corroborated by 2+ sources
SHOC2(2)
0.021 0.500 5.84e-3 7.05e-3 ✓ sig. Cluster 42 →
Gestational diabetes Neuralgic amyotrophy
1 gene
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1 of 1 corroborated by 2+ sources
SEPTIN9(4)
0.011 1.000 5.84e-3 7.05e-3 ✓ sig. —
Ciliary dyskinesia dilated cardiomyopathy 1FF
1 gene
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1 of 1 corroborated by 2+ sources
TNNI3(2)
0.011 1.000 5.84e-3 7.05e-3 ✓ sig. —
Ciliary dyskinesia dilated cardiomyopathy 2A
1 gene
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1 of 1 corroborated by 2+ sources
TNNI3(2)
0.011 1.000 5.84e-3 7.05e-3 ✓ sig. —
Gestational diabetes high myopia-sensorineural deafness syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLITRK6(2)
0.011 1.000 5.84e-3 7.05e-3 ✓ sig. —
Gestational diabetes TSPAN12-related exudative vitreoretinopathy
1 gene
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1 of 1 corroborated by 2+ sources
TSPAN12(2)
0.011 1.000 5.84e-3 7.05e-3 ✓ sig. —
Ciliary dyskinesia Young syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CFAP221(5)
0.011 1.000 5.84e-3 7.05e-3 ✓ sig. —
Ciliary dyskinesia primary ciliary dyskinesia 1
1 gene
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1 of 1 corroborated by 2+ sources
DNAI1(5)
0.011 1.000 5.84e-3 7.05e-3 ✓ sig. Cluster 9 →
Ciliary dyskinesia primary ciliary dyskinesia 10
1 gene
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1 of 1 corroborated by 2+ sources
DNAAF2(7)
0.011 1.000 5.84e-3 7.05e-3 ✓ sig. Cluster 9 →
Ciliary dyskinesia primary ciliary dyskinesia 11
1 gene
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1 of 1 corroborated by 2+ sources
RSPH4A(7)
0.011 1.000 5.84e-3 7.05e-3 ✓ sig. Cluster 9 →
Ciliary dyskinesia primary ciliary dyskinesia 12
1 gene
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1 of 1 corroborated by 2+ sources
RSPH9(7)
0.011 1.000 5.84e-3 7.05e-3 ✓ sig. Cluster 9 →
Ciliary dyskinesia primary ciliary dyskinesia 13
1 gene
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1 of 1 corroborated by 2+ sources
DNAAF1(6)
0.011 1.000 5.84e-3 7.05e-3 ✓ sig. —
Ciliary dyskinesia primary ciliary dyskinesia 14
1 gene
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1 of 1 corroborated by 2+ sources
CCDC39(7)
0.011 1.000 5.84e-3 7.05e-3 ✓ sig. —
Ciliary dyskinesia primary ciliary dyskinesia 16
1 gene
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1 of 1 corroborated by 2+ sources
DNAL1(7)
0.011 1.000 5.84e-3 7.05e-3 ✓ sig. Cluster 9 →
Ciliary dyskinesia primary ciliary dyskinesia 17
1 gene
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1 of 1 corroborated by 2+ sources
DNAAF19(7)
0.011 1.000 5.84e-3 7.05e-3 ✓ sig. Cluster 9 →
Ciliary dyskinesia primary ciliary dyskinesia 18
1 gene
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1 of 1 corroborated by 2+ sources
DNAAF5(7)
0.011 1.000 5.84e-3 7.05e-3 ✓ sig. Cluster 9 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.