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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
immunodeficiency 25 Seasonal allergic rhinitis
1 gene
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1 of 1 corroborated by 2+ sources
CD247(2)
0.010 1.000 6.49e-3 7.75e-3 ✓ sig. —
Intellectual developmental disorder seizures cerebellar Seasonal allergic rhinitis
1 gene
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1 of 1 corroborated by 2+ sources
RORA(4)
0.010 1.000 6.49e-3 7.75e-3 ✓ sig. —
Adenoid cystic carcinoma Intellectual disability with craniofacial dysmorphism and macrocephaly
1 gene
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1 of 1 corroborated by 2+ sources
H1-4(2)
0.010 1.000 6.49e-3 7.75e-3 ✓ sig. —
interstitial lung disease 1 Obstructive airway disease
1 gene
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1 of 1 corroborated by 2+ sources
SFTPA1(2)
0.010 1.000 6.49e-3 7.75e-3 ✓ sig. —
Laryngo-onycho-cutaneous syndrome Seasonal allergic rhinitis
1 gene
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1 of 1 corroborated by 2+ sources
LAMA3(6)
0.010 1.000 6.49e-3 7.75e-3 ✓ sig. —
Adenoid cystic carcinoma floating-harbor syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SRCAP(2)
0.010 1.000 6.49e-3 7.75e-3 ✓ sig. —
Adenoid cystic carcinoma megalencephalic leukoencephalopathy with subcortical cysts 1
1 gene
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1 of 1 corroborated by 2+ sources
MLC1(2)
0.010 1.000 6.49e-3 7.75e-3 ✓ sig. —
Adenoid cystic carcinoma Zhu-tokita-takenouchi-kim syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SON(6)
0.010 1.000 6.49e-3 7.75e-3 ✓ sig. —
Birbeck granule deficiency Seasonal allergic rhinitis
1 gene
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1 of 1 corroborated by 2+ sources
CD207(4)
0.010 1.000 6.49e-3 7.75e-3 ✓ sig. —
Seasonal allergic rhinitis Sensorineural deafness with renal dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
BSND(2)
0.010 1.000 6.49e-3 7.75e-3 ✓ sig. —
Adenoid cystic carcinoma severe combined immunodeficiency due to DNA-PKcs deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PRKDC(2)
0.010 1.000 6.49e-3 7.75e-3 ✓ sig. —
Adenoid cystic carcinoma Shukla-vernon syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BCORL1(5)
0.010 1.000 6.49e-3 7.75e-3 ✓ sig. —
Obstructive airway disease susceptibility to respiratory infections associated with CD8alpha chain mutation
1 gene
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1 of 1 corroborated by 2+ sources
CD8A(2)
0.010 1.000 6.49e-3 7.75e-3 ✓ sig. Cluster 119 →
Adenoid cystic carcinoma Developmental delay with hypotonia and behavioral abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
SRCAP(5)
0.010 1.000 6.49e-3 7.75e-3 ✓ sig. —
Adenoid cystic carcinoma Developmental delay with hypotonia and impaired language
1 gene
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1 of 1 corroborated by 2+ sources
FBXW7(5)
0.010 1.000 6.49e-3 7.75e-3 ✓ sig. —
Adenoid cystic carcinoma autosomal dominant combined immunodeficiency due to ERBIN deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ERBIN(2)
0.010 1.000 6.49e-3 7.75e-3 ✓ sig. —
Deafness-infertility syndrome Hereditary hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
STRC(5)
0.019 0.500 6.48e-3 7.75e-3 ✓ sig. Cluster 26 →
Dementia in huntington’s disease Small vessel stroke
1 gene
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1 of 1 corroborated by 2+ sources
JPH3(2)
0.019 0.500 6.48e-3 7.75e-3 ✓ sig. —
Promyelocytic leukemia Specific granule deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CEBPE(5)
0.019 0.500 6.48e-3 7.75e-3 ✓ sig. —
Auditory system disease Thyroid carcinoma
1 gene
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VAV3(1)
0.050 0.111 6.41e-3 7.68e-3 ✓ sig. —
ATP6AP2-related disorder Congenital disorder of glycosylation
1 gene
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1 of 1 corroborated by 2+ sources
ATP6AP2(5)
0.010 1.000 6.43e-3 7.68e-3 ✓ sig. —
B4GALT1-congenital disorder of glycosylation Congenital disorder of glycosylation
1 gene
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1 of 1 corroborated by 2+ sources
B4GALT1(6)
0.010 1.000 6.43e-3 7.68e-3 ✓ sig. —
Congenital disorder of glycosylation RFT1-congenital disorder of glycosylation
1 gene
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1 of 1 corroborated by 2+ sources
RFT1(5)
0.010 1.000 6.43e-3 7.68e-3 ✓ sig. Cluster 17 →
Congenital disorder of glycosylation Sandestig-stefanova syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NUP188(5)
0.010 1.000 6.43e-3 7.68e-3 ✓ sig. Cluster 17 →
Congenital disorder of glycosylation Saul-wilson syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COG4(7)
0.010 1.000 6.43e-3 7.68e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.