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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Cerebellar ataxia spinocerebellar ataxia, autosomal recessive 23
1 gene
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1 of 1 corroborated by 2+ sources
TDP2(3)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. Cluster 79 →
Spermatogenic failure stankiewicz-isidor syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PSMD12(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Premature ovarian failure SYCE1-related gametogenic failure
1 gene
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1 of 1 corroborated by 2+ sources
SYCE1(5)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. Cluster 31 →
Spermatogenic failure SYCE1-related gametogenic failure
1 gene
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1 of 1 corroborated by 2+ sources
SYCE1(6)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. Cluster 31 →
Cerebellar ataxia Troyer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPART(4)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Tetralogy of fallot Truncus arteriosus
1 gene
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1 of 1 corroborated by 2+ sources
TMEM260(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. Cluster 111 →
Premature ovarian failure Udp-glucose-hexose-1-phosphate uridylyltransferase
1 gene
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1 of 1 corroborated by 2+ sources
GALT(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Premature ovarian failure Weiss-kruszka syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ZNF462(6)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Spermatogenic failure Xy gonadal dysgenesis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PPP2R3C(4)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
PLD1-related congenital heart disease Tetralogy of fallot
1 gene
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1 of 1 corroborated by 2+ sources
PLD1(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Cerebellar ataxia POLR1C-related disorder
1 gene
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1 of 1 corroborated by 2+ sources
POLR1C(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Cerebellar ataxia POLR3B-related disorder
1 gene
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1 of 1 corroborated by 2+ sources
POLR3B(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
primary ciliary dyskinesia 20 Tetralogy of fallot
1 gene
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1 of 1 corroborated by 2+ sources
ODAD1(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Premature ovarian failure primordial dwarfism-immunodeficiency-lipodystrophy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PRIM1(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Premature ovarian failure Prognathism
1 gene
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1 of 1 corroborated by 2+ sources
ADAMTS1(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Premature ovarian failure RAD51C-related cancer predisposition
1 gene
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1 of 1 corroborated by 2+ sources
RAD51C(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Cayman type cerebellar ataxia Cerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
ATCAY(6)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. Cluster 79 →
Cerebellar ataxia Cervical dystonia
1 gene
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1 of 1 corroborated by 2+ sources
CIZ1(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Chromosome 15q deletion syndrome Tetralogy of fallot
1 gene
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1 of 1 corroborated by 2+ sources
MCTP2(3)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. Cluster 111 →
Chromosome 16p11.2 microdeletion syndrome Premature ovarian failure
1 gene
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1 of 1 corroborated by 2+ sources
SH2B1(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Chylothorax Tetralogy of fallot
1 gene
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1 of 1 corroborated by 2+ sources
PKD1L1(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
ciliary dyskinesia, primary, 43 Tetralogy of fallot
1 gene
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1 of 1 corroborated by 2+ sources
FOXJ1(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
ciliary dyskinesia, primary, 54 Spermatogenic failure
1 gene
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1 of 1 corroborated by 2+ sources
CFAP54(3)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
colorectal cancer, hereditary nonpolyposis, type 7 Premature ovarian failure
1 gene
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1 of 1 corroborated by 2+ sources
MLH3(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Congenital alpha-fetoprotein deficiency Premature ovarian failure
1 gene
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1 of 1 corroborated by 2+ sources
AFP(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. Cluster 31 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.