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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Lymphocytic leukemia Partial corpus callosum agenesis
1 gene
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1 of 1 corroborated by 2+ sources
KPNA7(3)
0.009 1.000 7.47e-3 8.76e-3 ✓ sig. —
Pancreatic trypsinogen deficiency Pancreatitis
1 gene
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1 of 1 corroborated by 2+ sources
PRSS1(4)
0.017 0.500 7.39e-3 8.70e-3 ✓ sig. —
Neutropenia Specific granule deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SMARCD2(5)
0.017 0.500 7.39e-3 8.70e-3 ✓ sig. —
Dry eye syndrome Focal facial dermal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
TWIST2(6)
0.017 0.500 7.39e-3 8.70e-3 ✓ sig. —
Cerebellar ataxia, neuropathy, and vestibular areflexia Osteosarcoma
1 gene
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1 of 1 corroborated by 2+ sources
RFC1(4)
0.017 0.500 7.39e-3 8.70e-3 ✓ sig. —
Bloom syndrome Osteosarcoma
1 gene
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1 of 1 corroborated by 2+ sources
BLM(8)
0.017 0.500 7.39e-3 8.70e-3 ✓ sig. —
Blepharophimosis-ptosis-epicanthus inversus syndrome Premature ovarian failure
1 gene
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1 of 1 corroborated by 2+ sources
FOXL2(6)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
fanconi anemia complementation group o Premature ovarian failure
1 gene
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1 of 1 corroborated by 2+ sources
RAD51C(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Fanconi anemia complementation group U Premature ovarian failure
1 gene
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1 of 1 corroborated by 2+ sources
XRCC2(4)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Fanconi anemia complementation group U Spermatogenic failure
1 gene
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1 of 1 corroborated by 2+ sources
XRCC2(5)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Genetic infertility Premature ovarian failure
1 gene
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1 of 1 corroborated by 2+ sources
SPATA22(3)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
lessel-kreienkamp syndrome Premature ovarian failure
1 gene
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1 of 1 corroborated by 2+ sources
AGO2(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Male infertility motility disorder Spermatogenic failure
1 gene
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1 of 1 corroborated by 2+ sources
CCDC146(3)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
MCM9-related gametogenic failure Premature ovarian failure
1 gene
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1 of 1 corroborated by 2+ sources
MCM9(3)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Cerebellar ataxia megalencephalic leukoencephalopathy with subcortical cysts 1
1 gene
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1 of 1 corroborated by 2+ sources
MLC1(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Congenitally uncorrected transposition of the great arteries Tetralogy of fallot
1 gene
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1 of 1 corroborated by 2+ sources
CFC1(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
HAND2 related congenital heart defect Tetralogy of fallot
1 gene
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1 of 1 corroborated by 2+ sources
HAND2(3)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Helsmoortel-van der aa syndrome Tetralogy of fallot
1 gene
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1 of 1 corroborated by 2+ sources
ADNP(3)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Hyperprolactinemia Premature ovarian failure
1 gene
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1 of 1 corroborated by 2+ sources
PRLR(4)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Spermatogenic failure spermatogenic failure 38
1 gene
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1 of 1 corroborated by 2+ sources
ARMC2(5)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. Cluster 31 →
Spermatogenic failure spermatogenic failure 39
1 gene
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1 of 1 corroborated by 2+ sources
DNAH17(4)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. Cluster 31 →
Spermatogenic failure spermatogenic failure 46
1 gene
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1 of 1 corroborated by 2+ sources
DNAH8(5)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Spermatogenic failure spermatogenic failure 5
1 gene
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1 of 1 corroborated by 2+ sources
AURKC(3)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Cerebellar ataxia spinocerebellar ataxia type 42
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1G(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. Cluster 79 →
Cerebellar ataxia spinocerebellar ataxia type 5
1 gene
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1 of 1 corroborated by 2+ sources
SPTBN2(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.