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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
isolated sulfite oxidase deficiency Vitiligo
1 gene
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1 of 1 corroborated by 2+ sources
SUOX(2)
0.008 1.000 8.18e-3 9.49e-3 ✓ sig. Cluster 39 →
developmental and epileptic encephalopathy, 41 Vitiligo
1 gene
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1 of 1 corroborated by 2+ sources
SLC1A2(2)
0.008 1.000 8.18e-3 9.49e-3 ✓ sig. —
Brugada syndrome Early-onset progressive encephalopathy-hearing loss-pons hypoplasia-brain atrophy syndrome
1 gene
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LIPT2(1)
0.015 0.500 8.17e-3 9.48e-3 ✓ sig. —
Congenital vertical talus Mouth neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
HOXD10(5)
0.015 0.500 8.17e-3 9.48e-3 ✓ sig. —
17 alpha-hydroxyprogesterone aldolase deficiency Carpal tunnel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AKR1C2(2)
0.015 0.500 8.17e-3 9.48e-3 ✓ sig. —
Congenital disorder of deglycosylation Hyperinsulinism
1 gene
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1 of 1 corroborated by 2+ sources
NEIL1(2)
0.022 0.333 8.16e-3 9.47e-3 ✓ sig. —
Navajo neurohepatopathy Proteinuria
1 gene
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1 of 1 corroborated by 2+ sources
MPV17(3)
0.022 0.333 8.16e-3 9.47e-3 ✓ sig. —
Dent disease Proteinuria
1 gene
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1 of 1 corroborated by 2+ sources
CLCN5(7)
0.022 0.333 8.16e-3 9.47e-3 ✓ sig. —
Diencephalic mesencephalic junction dysplasia Lupus nephritis
1 gene
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1 of 1 corroborated by 2+ sources
GSX2(5)
0.022 0.333 8.16e-3 9.47e-3 ✓ sig. —
Brain disease Carnitine palmitoyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CPT2(8)
0.022 0.333 8.16e-3 9.47e-3 ✓ sig. —
Blepharospasm Psychotic disorders
1 gene
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1 of 1 corroborated by 2+ sources
DRD5(3)
0.008 1.000 8.12e-3 9.42e-3 ✓ sig. —
cardiomyopathy, dilated, 2g Psychotic disorders
1 gene
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1 of 1 corroborated by 2+ sources
LMOD2(2)
0.008 1.000 8.12e-3 9.42e-3 ✓ sig. —
Congenital brain dysgenesis due to glutamine synthetase deficiency Psychotic disorders
1 gene
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1 of 1 corroborated by 2+ sources
GLUL(5)
0.008 1.000 8.12e-3 9.42e-3 ✓ sig. —
microcephalic osteodysplastic primordial dwarfism type II Psychotic disorders
1 gene
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1 of 1 corroborated by 2+ sources
PCNT(2)
0.008 1.000 8.12e-3 9.42e-3 ✓ sig. —
extraoral halitosis due to methanethiol oxidase deficiency Psychotic disorders
1 gene
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1 of 1 corroborated by 2+ sources
0.008 1.000 8.12e-3 9.42e-3 ✓ sig. —
Anterior maxillary protrusion-strabismus-intellectual disability syndrome Psychotic disorders
1 gene
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1 of 1 corroborated by 2+ sources
SOBP(2)
0.008 1.000 8.12e-3 9.42e-3 ✓ sig. —
Benign essential blepharospasm Psychotic disorders
1 gene
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1 of 1 corroborated by 2+ sources
DRD5(2)
0.008 1.000 8.12e-3 9.42e-3 ✓ sig. —
Hypertryptophanemia Psychotic disorders
1 gene
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1 of 1 corroborated by 2+ sources
TDO2(6)
0.008 1.000 8.12e-3 9.42e-3 ✓ sig. —
Intellectual disability, anterior maxillary protrusion, and strabismus Psychotic disorders
1 gene
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1 of 1 corroborated by 2+ sources
SOBP(2)
0.008 1.000 8.12e-3 9.42e-3 ✓ sig. —
pediatric systemic lupus erythematosus Psychotic disorders
1 gene
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1 of 1 corroborated by 2+ sources
SAT1(2)
0.008 1.000 8.12e-3 9.42e-3 ✓ sig. —
phelan-mcdermid syndrome Psychotic disorders
1 gene
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1 of 1 corroborated by 2+ sources
SHANK3(2)
0.008 1.000 8.12e-3 9.42e-3 ✓ sig. —
cone-rod dystrophy 20 Gallstones
1 gene
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1 of 1 corroborated by 2+ sources
POC1B(2)
0.008 1.000 8.05e-3 9.35e-3 ✓ sig. Cluster 237 →
Gallstones Mucoepithelial dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SREBF1(2)
0.008 1.000 8.05e-3 9.35e-3 ✓ sig. —
Gallstones Intestinal dysmotility syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ANO1(4)
0.008 1.000 8.05e-3 9.35e-3 ✓ sig. —
Gallstones johanson-blizzard syndrome
1 gene
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1 of 1 corroborated by 2+ sources
UBR1(2)
0.008 1.000 8.05e-3 9.35e-3 ✓ sig. Cluster 237 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.