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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Thrombocytopenia thrombocytopenia-absent radius syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RBM8A(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Immunodeficiency TRAF3 haploinsufficiency
1 gene
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1 of 1 corroborated by 2+ sources
TRAF3(3)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Thrombocytopenia Udp-glucose 4-epimerase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GALE(3)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Thrombocytopenia Upshaw-schulman syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Immunodeficiency X-linked common variable immunodeficiency phenotype due to sh3kbp1 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SH3KBP1(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Thrombocytopenia X-linked severe congenital neutropenia
1 gene
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1 of 1 corroborated by 2+ sources
WAS(6)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Thrombocytopenia X-linked thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
WAS(5)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Autism Trimethylaminuria
2 genes
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2 of 2 corroborated by 2+ sources
FMO3(5), FMO4(2)
0.001 1.000 9.02e-3 1.03e-2 ✓ sig. —
Cole-carpenter syndrome Retinal detachment
1 gene
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1 of 1 corroborated by 2+ sources
CRTAP(3)
0.020 0.333 8.94e-3 1.03e-2 ✓ sig. —
Parenchymal hematoma Skeletal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SEMA3A(2)
0.034 0.167 8.93e-3 1.03e-2 ✓ sig. —
Non-small-cell lung carcinoma palatal anomalies-widely spaced teeth-facial dysmorphism-developmental delay syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KDM1A(2)
0.007 1.000 8.90e-3 1.03e-2 ✓ sig. —
Non-small-cell lung carcinoma Prognathism
1 gene
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1 of 1 corroborated by 2+ sources
ADAMTS1(2)
0.007 1.000 8.90e-3 1.03e-2 ✓ sig. —
Non-small-cell lung carcinoma Weiss-kruszka syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ZNF462(6)
0.007 1.000 8.90e-3 1.03e-2 ✓ sig. —
Non-small-cell lung carcinoma xeroderma pigmentosum group C
1 gene
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1 of 1 corroborated by 2+ sources
XPC(2)
0.007 1.000 8.90e-3 1.03e-2 ✓ sig. —
neurodevelopmental disorder with cardiomyopathy, spasticity, and brain abnormalities Non-small-cell lung carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
SHMT2(2)
0.007 1.000 8.90e-3 1.03e-2 ✓ sig. —
Non-small-cell lung carcinoma Riddle syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RNF168(7)
0.007 1.000 8.90e-3 1.03e-2 ✓ sig. —
Cleft palate psychomotor retardation distinctive facial features Non-small-cell lung carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
KDM1A(3)
0.007 1.000 8.90e-3 1.03e-2 ✓ sig. —
immunodeficiency, common variable, 5 Non-small-cell lung carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
MS4A1(2)
0.007 1.000 8.90e-3 1.03e-2 ✓ sig. —
Appendiceal disorder Glioblastoma
2 genes
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FFAR2(1), KRTDAP(1)
0.003 0.500 8.83e-3 1.02e-2 ✓ sig. —
Ataxia, spastic, autosomal recessive Combined oxidative phosphorylation deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MARS2(6)
0.014 0.500 8.81e-3 1.02e-2 ✓ sig. —
Hyperprolinemia Nervous system disease
1 gene
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1 of 1 corroborated by 2+ sources
PRODH(6)
0.014 0.500 8.81e-3 1.02e-2 ✓ sig. —
Combined oxidative phosphorylation deficiency Sandhoff disease
1 gene
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1 of 1 corroborated by 2+ sources
GFM2(5)
0.014 0.500 8.81e-3 1.02e-2 ✓ sig. Cluster 50 →
Nervous system disease Omodysplasia
1 gene
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1 of 1 corroborated by 2+ sources
GPC6(6)
0.014 0.500 8.81e-3 1.02e-2 ✓ sig. —
autosomal agammaglobulinemia Non-hodgkins lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
TCF3(2)
0.007 1.000 8.77e-3 1.01e-2 ✓ sig. —
friedreich ataxia Non-hodgkins lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
FXN(2)
0.007 1.000 8.77e-3 1.01e-2 ✓ sig. Cluster 67 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.