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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Contact dermatitis White spongue nevus
1 gene
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1 of 1 corroborated by 2+ sources
KRT4(6)
0.013 0.500 9.72e-3 1.10e-2 ✓ sig. —
Contact dermatitis Lewis lung carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
TXNRD1(2)
0.013 0.500 9.72e-3 1.10e-2 ✓ sig. Cluster 16 →
15q11.2 microdeletion syndrome Lissencephaly
1 gene
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1 of 1 corroborated by 2+ sources
TUBG1(3)
0.019 0.333 9.71e-3 1.10e-2 ✓ sig. —
Choroidal melanoma Spondyloepimetaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
DDR2(5)
0.032 0.167 9.70e-3 1.10e-2 ✓ sig. —
Esophageal neoplasms X-linked lymphoproliferative syndrome
1 gene
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1 of 1 corroborated by 2+ sources
XIAP(5)
0.013 0.500 9.59e-3 1.09e-2 ✓ sig. —
Cone-rod dystrophy Sveinsson chorioretinal atrophy
1 gene
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1 of 1 corroborated by 2+ sources
SEMA4A(6)
0.013 0.500 9.59e-3 1.09e-2 ✓ sig. —
Cone rod dystrophy and hearing loss Cone-rod dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CEP78(6)
0.013 0.500 9.59e-3 1.09e-2 ✓ sig. —
Biliary cholangitis Childhood-onset sensorineural hearing impairment
1 gene
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1 of 1 corroborated by 2+ sources
PRORP(2)
0.007 1.000 9.55e-3 1.09e-2 ✓ sig. —
Biliary cholangitis immunodeficiency 19
1 gene
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1 of 1 corroborated by 2+ sources
CD3D(2)
0.007 1.000 9.55e-3 1.09e-2 ✓ sig. —
Biliary cholangitis Inner ear disease
1 gene
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CENPB(1)
0.007 1.000 9.55e-3 1.09e-2 ✓ sig. —
complex hereditary spastic paraplegia Congenital anomalies of kidney and urinary tract
1 gene
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1 of 1 corroborated by 2+ sources
DSTYK(4)
0.036 0.143 9.51e-3 1.08e-2 ✓ sig. —
Heart disease immunodeficiency 73b with defective neutrophil chemotaxis and lymphopenia
1 gene
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1 of 1 corroborated by 2+ sources
RAC2(3)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Heart disease immunodeficiency 73c with defective neutrophil chemotaxis and hypogammaglobulinemia
1 gene
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1 of 1 corroborated by 2+ sources
RAC2(3)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Anxiety disorder Intermittent porphyria
1 gene
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1 of 1 corroborated by 2+ sources
HMBS(3)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Heart disease neutrophil immunodeficiency syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RAC2(3)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Osteomalacia Osteoporosis
1 gene
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1 of 1 corroborated by 2+ sources
MEPE(3)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Autoinflammation, antibody deficiency, and immune dysregulation Heart disease
1 gene
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1 of 1 corroborated by 2+ sources
PLCG2(6)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Anxiety disorder PAX5-related B lymphopenia and autism spectrum disorder
1 gene
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1 of 1 corroborated by 2+ sources
PAX5(2)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Osteoporosis purine nucleoside phosphorylase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PNP(3)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Caudal duplication anomaly Osteoporosis
1 gene
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1 of 1 corroborated by 2+ sources
AXIN1(6)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Cervicitis Osteoporosis
1 gene
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IL32(1)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Cholesterol ester storage disease Heart disease
1 gene
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1 of 1 corroborated by 2+ sources
LIPA(6)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Anxiety disorder Chylothorax
1 gene
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1 of 1 corroborated by 2+ sources
PKD1L1(2)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Anxiety disorder leukemia, acute lymphoblastic, susceptibility to, 3
1 gene
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1 of 1 corroborated by 2+ sources
PAX5(2)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Heart disease lysosomal acid lipase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
LIPA(2)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.