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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Epileptic encephalopathy, early infantile, 87 Major depressive disorder
1 gene
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1 of 1 corroborated by 2+ sources
CDK19(2)
0.001 1.000 1.26e-1 1.27e-1 —
Epileptic encephalopathy, early infantile, 87 Neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
CDK19(2)
0.001 1.000 6.50e-2 6.62e-2 —
Epileptic encephalopathy, early infantile, 82 Mitochondrial disease
1 gene
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1 of 1 corroborated by 2+ sources
GOT2(2)
0.004 1.000 1.60e-2 1.74e-2 ✓ sig. —
Developmental and epileptic encephalopathy Epileptic encephalopathy, early infantile, 82
1 gene
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1 of 1 corroborated by 2+ sources
GOT2(5)
0.004 1.000 1.49e-2 1.63e-2 ✓ sig. —
Developmental and epileptic encephalopathy Epileptic encephalopathy, early infantile, 87
1 gene
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1 of 1 corroborated by 2+ sources
CDK19(6)
0.004 1.000 1.49e-2 1.63e-2 ✓ sig. —
Epileptic encephalopathy, early infantile, 84 Liver neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
UGDH(2)
0.007 1.000 9.62e-3 1.08e-2 ✓ sig. —
Cholecystolithiasis Epileptic encephalopathy, early infantile, 84
1 gene
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1 of 1 corroborated by 2+ sources
UGDH(2)
0.007 1.000 9.17e-3 1.03e-2 ✓ sig. —
Epileptic encephalopathy, early infantile, 84 Gallstones
1 gene
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1 of 1 corroborated by 2+ sources
UGDH(2)
0.008 1.000 8.01e-3 9.13e-3 ✓ sig. —
Developmental disorder Epileptic encephalopathy, early infantile, 8
1 gene
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ARHGEF9(1)
0.011 1.000 5.75e-3 6.78e-3 ✓ sig. —
Epileptic encephalopathy, early infantile, 84 Hemorrhoid
1 gene
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1 of 1 corroborated by 2+ sources
UGDH(2)
0.011 1.000 5.68e-3 6.72e-3 ✓ sig. —
Epileptic encephalopathy, early infantile, 8 Hypogonadism
1 gene
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1 of 1 corroborated by 2+ sources
ARHGEF9(2)
0.013 1.000 4.91e-3 5.89e-3 ✓ sig. —
Epileptic encephalopathy, early infantile, 8 X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
ARHGEF9(2)
0.013 1.000 4.78e-3 5.75e-3 ✓ sig. —
Epileptic encephalopathy, early infantile, 8 X-linked complex neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
ARHGEF9(3)
0.028 1.000 2.26e-3 2.99e-3 ✓ sig. —
Epileptic encephalopathy, early infantile, 81 Pituitary stalk interruption syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DMXL2(2)
0.030 1.000 2.07e-3 2.79e-3 ✓ sig. —
Epileptic encephalopathy, early infantile, 84 West syndrome
1 gene
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1 of 1 corroborated by 2+ sources
UGDH(2)
0.031 1.000 2.00e-3 2.72e-3 ✓ sig. Cluster 360 →
Epileptic encephalopathy, early infantile, 81 Primary aldosteronism
1 gene
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1 of 1 corroborated by 2+ sources
DMXL2(2)
0.059 1.000 1.03e-3 1.57e-3 ✓ sig. —
Epileptic encephalopathy, early infantile, 81 Hearing loss, autosomal recessive
1 gene
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DMXL2(1)
0.111 1.000 5.17e-4 9.13e-4 ✓ sig. —
Encephalopathy Epileptic encephalopathy, early infantile, 82
1 gene
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GOT2(1)
0.167 1.000 3.23e-4 6.41e-4 ✓ sig. Cluster 217 →
Epileptic encephalopathy, early infantile, 81 Ohtahara syndrome
1 gene
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DMXL2(1)
0.500 1.000 6.46e-5 1.98e-4 ✓ sig. —
Epileptic encephalopathy, early infantile, 8 Hyperekplexia epilepsy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ARHGEF9(3)
0.500 1.000 6.46e-5 1.98e-4 ✓ sig. —
Epileptic encephalopathy, early infantile, 87 Intellectual disability and epileptic encephalopathy
1 gene
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CDK19(1)
0.500 1.000 6.46e-5 1.98e-4 ✓ sig. —
Epileptic encephalopathy, early infantile, 81 Polyendocrine-polyneuropathy syndrome
1 gene
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DMXL2(1)
0.500 1.000 6.46e-5 1.98e-4 ✓ sig. —

Showing 22 of 22 matching pairs, sorted by significance (descending). Click a column header to sort.