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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Autism gaze palsy, familial horizontal, with progressive scoliosis 1
1 gene
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1 of 1 corroborated by 2+ sources
ROBO3(3)
0.001 1.000 9.50e-2 9.60e-2 —
Autism Bosch-boonstra-schaaf optic atrophy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NR2F1(6)
0.001 1.000 9.50e-2 9.60e-2 —
Autism Brainstem dysplasia
1 gene
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SMG9(1)
0.001 1.000 9.50e-2 9.60e-2 —
Autism Branched-chain keto acid dehydrogenase kinase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
BCKDK(5)
0.001 1.000 9.50e-2 9.60e-2 —
Argininosuccinic aciduria Autism
1 gene
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1 of 1 corroborated by 2+ sources
ASL(7)
0.001 1.000 9.50e-2 9.60e-2 —
Arthrogryposis with neurodevelopmental impairment and seizures Autism
1 gene
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1 of 1 corroborated by 2+ sources
SLC35A3(6)
0.001 1.000 9.50e-2 9.60e-2 —
aspartylglucosaminuria Autism
1 gene
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1 of 1 corroborated by 2+ sources
AGA(2)
0.001 1.000 9.50e-2 9.60e-2 —
Autism Autism-epilepsy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BCKDK(2)
0.001 1.000 9.50e-2 9.60e-2 —
Autism Intellectual developmental disorder behavioral short stature
1 gene
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1 of 1 corroborated by 2+ sources
PUS7(4)
0.001 1.000 9.50e-2 9.60e-2 —
Autism Intellectual developmental disorder growth seizures
1 gene
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1 of 1 corroborated by 2+ sources
ABCA2(4)
0.001 1.000 9.50e-2 9.60e-2 —
Autism Cerebral arterial disease
1 gene
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ADGRE3(1)
0.001 1.000 9.50e-2 9.60e-2 —
Autism retinitis pigmentosa 18
1 gene
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1 of 1 corroborated by 2+ sources
PRPF3(2)
0.001 1.000 9.50e-2 9.60e-2 Cluster 2 →
Autism spastic tetraplegia-thin corpus callosum-progressive postnatal microcephaly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC1A4(3)
0.001 1.000 9.50e-2 9.60e-2 —
Autism STT3A-congenital disorder of glycosylation
1 gene
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1 of 1 corroborated by 2+ sources
STT3A(2)
0.001 1.000 9.50e-2 9.60e-2 —
Autism SYNCRIP-related neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
SYNCRIP(2)
0.001 1.000 9.50e-2 9.60e-2 —
Autism t-cell immunodeficiency, congenital alopecia, and nail dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
FOXN1(2)
0.001 1.000 9.50e-2 9.60e-2 —
Autism Desmosterolosis
1 gene
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1 of 1 corroborated by 2+ sources
DHCR24(7)
0.001 1.000 9.50e-2 9.60e-2 —
Autism Developmental delay due to metabolic enzyme deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ALDH6A1(3)
0.001 1.000 9.50e-2 9.60e-2 —
Atelis syndrome Squamous cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
SLF2(4)
0.001 0.500 9.99e-2 1.01e-1 —
Intellectual developmental disorder Turnpenny-fry syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PCGF2(5)
0.001 0.500 1.02e-1 1.03e-1 —
Intellectual developmental disorder Ververi-brady syndrome
1 gene
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1 of 1 corroborated by 2+ sources
QRICH1(4)
0.001 0.500 1.02e-1 1.03e-1 —
Gout Pyruvate kinase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PKLR(2)
0.001 0.500 1.04e-1 1.05e-1 —
Gout Renal glycosuria
1 gene
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1 of 1 corroborated by 2+ sources
SLC5A1(2)
0.001 0.500 1.04e-1 1.05e-1 —
1p36.33 duplication syndrome Prostatic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
ATAD3A(3)
0.002 0.333 1.17e-1 1.18e-1 —
adult neuronal ceroid lipofuscinosis Neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
CTSF(2)
0.001 0.500 1.18e-1 1.19e-1 —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.