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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Colorectal cancer neurodevelopmental disorder with hypotonia, facial dysmorphism, and brain abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
PPP1R21(2)
0.001 1.000 6.34e-2 6.48e-2 —
Colorectal cancer neuropathy, hereditary sensory and autonomic, type 1C
1 gene
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1 of 1 corroborated by 2+ sources
SPTLC2(2)
0.001 1.000 6.34e-2 6.48e-2 —
Colorectal cancer Osteootohepatoenteric syndrome
1 gene
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1 of 1 corroborated by 2+ sources
UNC45A(5)
0.001 1.000 6.34e-2 6.48e-2 —
Acantholytic blistering of oral and laryngeal mucosa Colorectal cancer
1 gene
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1 of 1 corroborated by 2+ sources
DSG3(4)
0.001 1.000 6.34e-2 6.48e-2 —
Acces syndrome Colorectal cancer
1 gene
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1 of 1 corroborated by 2+ sources
UBA2(3)
0.001 1.000 6.34e-2 6.48e-2 —
Chromosome 19q13.11 deletion syndrome Colorectal cancer
1 gene
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1 of 1 corroborated by 2+ sources
UBA2(2)
0.001 1.000 6.34e-2 6.48e-2 —
3-methylcrotonyl-coa carboxylase deficiency Substance abuse
1 gene
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1 of 1 corroborated by 2+ sources
MCCC2(5)
0.002 0.500 6.59e-2 6.74e-2 Cluster 2 →
Breast neoplasms Progressive arterial occlusive disease with hypertension
1 gene
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1 of 1 corroborated by 2+ sources
DAP3(2)
0.002 0.500 6.60e-2 6.75e-2 —
Partial deletion of short arm of chromosome 3 Scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
CHL1(2)
0.001 1.000 6.71e-2 6.85e-2 Cluster 2 →
primary ciliary dyskinesia 19 Scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
DNAAF11(2)
0.001 1.000 6.71e-2 6.85e-2 —
gaze palsy, familial horizontal, with progressive scoliosis 1 Scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
ROBO3(2)
0.001 1.000 6.71e-2 6.85e-2 —
glycosylphosphatidylinositol biosynthesis defect 17 Scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
PIGH(2)
0.001 1.000 6.71e-2 6.85e-2 —
hermansky-pudlak syndrome 5 Scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
HPS5(2)
0.001 1.000 6.71e-2 6.85e-2 —
Hypervalinemia Scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
BCAT2(5)
0.001 1.000 6.71e-2 6.85e-2 —
Delayed sleep phase syndrome Scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
CRY1(3)
0.001 1.000 6.71e-2 6.85e-2 —
Borderline personality disorder Scoliosis
1 gene
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TPH1(1)
0.001 1.000 6.71e-2 6.85e-2 —
Intellectual developmental disorder seizures dysmorphic gait Scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
WDR26(2)
0.001 1.000 6.71e-2 6.85e-2 —
Keratosis linearis-ichthyosis congenita-sclerosing keratoderma syndrome Scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
POMP(6)
0.001 1.000 6.71e-2 6.85e-2 —
Scoliosis Webb-dattani syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ARNT2(5)
0.001 1.000 6.71e-2 6.85e-2 —
Cerebrofacial arteriovenous metameric syndrome Scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
GNA14(2)
0.001 1.000 6.71e-2 6.85e-2 —
Autoinflammatory disease, systemic, with vasculitis Scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
LYN(4)
0.001 1.000 6.71e-2 6.85e-2 —
optic atrophy 11 Scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
YME1L1(2)
0.001 1.000 6.71e-2 6.85e-2 —
Nephronophthisis-like nephropathy Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
SLC41A1(4)
0.002 0.500 6.75e-2 6.90e-2 —
Brody myopathy Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
RABEP2(2)
0.002 0.500 6.75e-2 6.90e-2 —
3-methylcrotonyl-coa carboxylase deficiency Parkinson disease
1 gene
Show details
1 of 1 corroborated by 2+ sources
MCCC1(5)
0.002 0.500 6.75e-2 6.90e-2 Cluster 2 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.