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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Color vision deficiency Retinitis pigmentosa, hearing loss, premature aging, short stature, facial dysmorphism syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EXOSC2(5)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency Saccharopinuria
1 gene
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1 of 1 corroborated by 2+ sources
AASS(3)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency scott syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ANO6(2)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency spastic paraplegia, intellectual disability, nystagmus, and obesity
1 gene
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1 of 1 corroborated by 2+ sources
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency Ventriculomegaly with arthrogryposis
1 gene
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1 of 1 corroborated by 2+ sources
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency Webb-dattani syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ARNT2(5)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency lethal osteosclerotic bone dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
FAM20C(2)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency MEGF8-related Carpenter syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MEGF8(2)
0.001 1.000 6.27e-2 6.42e-2 —
band heterotopia of brain Color vision deficiency
1 gene
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1 of 1 corroborated by 2+ sources
EML1(2)
0.001 1.000 6.27e-2 6.42e-2 —
ciliary dyskinesia, primary, 53 Color vision deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CLXN(2)
0.001 1.000 6.27e-2 6.42e-2 —
Clark-baraitser syndrome Color vision deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TRIP12(5)
0.001 1.000 6.27e-2 6.42e-2 —
alkylglycerone-phosphate synthase deficiency Color vision deficiency
1 gene
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1 of 1 corroborated by 2+ sources
AGPS(2)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency phosphoenolpyruvate carboxykinase deficiency, cytosolic
1 gene
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1 of 1 corroborated by 2+ sources
PCK1(2)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency PLIN1-related familial partial lipodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
PLIN1(2)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency primary ciliary dyskinesia 16
1 gene
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1 of 1 corroborated by 2+ sources
DNAL1(2)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency red color blindness
1 gene
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1 of 1 corroborated by 2+ sources
OPN1LW(4)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency Hip dislocation-facial dysmorphism syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TRIM33(3)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency hyperlysinemia
1 gene
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1 of 1 corroborated by 2+ sources
AASS(2)
0.001 1.000 6.27e-2 6.42e-2 —
Colorectal cancer Hypochromic sideroblastic anemia
1 gene
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1 of 1 corroborated by 2+ sources
STEAP3(6)
0.001 1.000 6.34e-2 6.48e-2 —
Colorectal cancer Rin2 syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RIN2(5)
0.001 1.000 6.34e-2 6.48e-2 —
Colorectal cancer spinocerebellar ataxia, autosomal recessive 23
1 gene
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1 of 1 corroborated by 2+ sources
TDP2(2)
0.001 1.000 6.34e-2 6.48e-2 —
Colorectal cancer glycogen storage disease VI
1 gene
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1 of 1 corroborated by 2+ sources
PYGL(2)
0.001 1.000 6.34e-2 6.48e-2 —
Colorectal cancer GPR143-related foveal hypoplasia
1 gene
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1 of 1 corroborated by 2+ sources
GPR143(2)
0.001 1.000 6.34e-2 6.48e-2 —
Colorectal cancer Intellectual developmental disorder growth metabolic
1 gene
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1 of 1 corroborated by 2+ sources
DIP2B(3)
0.001 1.000 6.34e-2 6.48e-2 —
Colorectal cancer pili torti-developmental delay-neurological abnormalities syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HEPHL1(2)
0.001 1.000 6.34e-2 6.48e-2 Cluster 20 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.