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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Glioma Microscopic polyangiitis
1 gene
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CDH19(1)
0.001 1.000 4.92e-2 5.10e-2 —
Glioma neurodevelopmental disorder with or without seizures and gait abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
GRIA4(2)
0.001 1.000 4.92e-2 5.10e-2 —
Giant cell tumor of bone Glioma
1 gene
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H3-3A(1)
0.001 1.000 4.92e-2 5.10e-2 —
Glioma Rin2 syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RIN2(5)
0.001 1.000 4.92e-2 5.10e-2 —
Glioma Sarcosinemia
1 gene
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1 of 1 corroborated by 2+ sources
SARDH(7)
0.001 1.000 4.92e-2 5.10e-2 —
Glioma systemic lupus erythematosus 18
1 gene
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1 of 1 corroborated by 2+ sources
PLD4(2)
0.001 1.000 4.92e-2 5.10e-2 Cluster 284 →
Glioma thrombocytopenia 11 with multiple congenital anomalies and dysmorphic facies
1 gene
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1 of 1 corroborated by 2+ sources
RAP1B(2)
0.001 1.000 4.92e-2 5.10e-2 Cluster 284 →
Congenital anosmia Hearing loss
1 gene
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TENM1(1)
0.003 0.500 4.96e-2 5.14e-2 —
Anosmia Hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
TENM1(2)
0.003 0.500 4.96e-2 5.14e-2 —
Squamous cell carcinoma Vexas syndrome
1 gene
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1 of 1 corroborated by 2+ sources
UBA1(5)
0.001 1.000 5.12e-2 5.31e-2 —
immunodeficiency, common variable, 5 Squamous cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
MS4A1(2)
0.001 1.000 5.12e-2 5.31e-2 —
bleeding disorder, platelet-type, 22 Squamous cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
EPHB2(2)
0.001 1.000 5.12e-2 5.31e-2 —
autosomal dominant combined immunodeficiency due to ERBIN deficiency Squamous cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
ERBIN(2)
0.001 1.000 5.12e-2 5.31e-2 —
myopathy with abnormal lipid metabolism Squamous cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
FLAD1(2)
0.001 1.000 5.12e-2 5.31e-2 Cluster 20 →
Citrin deficiency Squamous cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
0.001 1.000 5.12e-2 5.31e-2 —
Partial deletion of short arm of chromosome 3 Squamous cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
CHL1(2)
0.001 1.000 5.12e-2 5.31e-2 —
progressive essential tremor-speech impairment-facial dysmorphism-intellectual disability-abnormal behavior syndrome Squamous cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A17(2)
0.001 1.000 5.12e-2 5.31e-2 —
Riddle syndrome Squamous cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
RNF168(7)
0.001 1.000 5.12e-2 5.31e-2 —
Bile duct disease Migraine
1 gene
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1 of 1 corroborated by 2+ sources
FECH(3)
0.002 0.500 5.18e-2 5.36e-2 —
Dilated cardiomyopathy Nephropathic cystinosis
1 gene
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TAX1BP3(1)
0.004 0.333 5.23e-2 5.41e-2 —
Intellectual developmental disorder NAA10-related syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NAA10(2)
0.001 1.000 5.25e-2 5.42e-2 —
Intellectual developmental disorder neonatal-onset encephalopathy with rigidity and seizures
1 gene
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1 of 1 corroborated by 2+ sources
BRAT1(2)
0.001 1.000 5.25e-2 5.42e-2 —
Intellectual developmental disorder neurodevelopmental disorder with cerebellar atrophy and with or without seizures
1 gene
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1 of 1 corroborated by 2+ sources
BRAT1(2)
0.001 1.000 5.25e-2 5.42e-2 —
Intellectual developmental disorder neurodevelopmental disorder with severe motor impairment and absent language
1 gene
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1 of 1 corroborated by 2+ sources
DHX30(2)
0.001 1.000 5.25e-2 5.42e-2 —
Intellectual developmental disorder neurodevelopmental disorder with spasticity, cataracts, and cerebellar hypoplasia
1 gene
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1 of 1 corroborated by 2+ sources
MED27(2)
0.001 1.000 5.25e-2 5.42e-2 Cluster 6 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.