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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Benign flecked retina Crohn disease
1 gene
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1 of 1 corroborated by 2+ sources
PLA2G5(3)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. Cluster 28 →
Benign flecked retina Inflammatory bowel disease
1 gene
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1 of 1 corroborated by 2+ sources
PLA2G5(3)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. Cluster 28 →
Hemifacial microsomia Peripheral arterial disease
1 gene
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1 of 1 corroborated by 2+ sources
ZYG11B(2)
0.006 0.250 4.52e-2 4.70e-2 ✓ sig. —
Aicardi syndrome Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
TEAD1(2)
0.003 0.500 4.57e-2 4.75e-2 ✓ sig. —
Peptic ulcer disease Tessadori-van haaften neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
H4C5(6)
0.008 0.167 4.62e-2 4.80e-2 ✓ sig. —
Carnitine acetyltransferase deficiency Eczema
1 gene
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1 of 1 corroborated by 2+ sources
CRAT(2)
0.003 0.500 4.68e-2 4.87e-2 ✓ sig. —
Buratti-harel syndrome Non-specific syndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
SIAH1(5)
0.003 0.500 4.72e-2 4.91e-2 ✓ sig. Cluster 6 →
Osteoarthritis Osteomalacia
1 gene
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1 of 1 corroborated by 2+ sources
MEPE(3)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. —
Osteoarthritis tooth agenesis, selective, 3
1 gene
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1 of 1 corroborated by 2+ sources
PAX9(2)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. —
Osteoarthritis Zaki syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WLS(3)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. —
Congenital lactase deficiency Osteoarthritis
1 gene
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1 of 1 corroborated by 2+ sources
LCT(4)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. Cluster 2 →
long chain 3-hydroxyacyl-coa dehydrogenase deficiency Osteoarthritis
1 gene
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1 of 1 corroborated by 2+ sources
HADHA(2)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. —
ciliary dyskinesia, primary, 54 Osteoarthritis
1 gene
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1 of 1 corroborated by 2+ sources
CFAP54(2)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. —
Citrin deficiency Osteoarthritis
1 gene
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1 of 1 corroborated by 2+ sources
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. —
COG5-congenital disorder of glycosylation Osteoarthritis
1 gene
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1 of 1 corroborated by 2+ sources
COG5(2)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. —
Intellectual developmental disorder dysmorphic Osteoarthritis
1 gene
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1 of 1 corroborated by 2+ sources
POU3F3(2)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. —
Intellectual developmental disorder dysmorphic skeletal Osteoarthritis
1 gene
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1 of 1 corroborated by 2+ sources
CNOT2(4)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. —
Intellectual developmental disorder dysmorphic speech skeletal Osteoarthritis
1 gene
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1 of 1 corroborated by 2+ sources
CNOT2(2)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. —
congenital myasthenic syndrome 12 Osteoarthritis
1 gene
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1 of 1 corroborated by 2+ sources
GFPT1(2)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. —
Congenital right-sided heart lesions Osteoarthritis
1 gene
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SLC27A6(1)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. —
Craniolenticulosutural dysplasia Osteoarthritis
1 gene
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1 of 1 corroborated by 2+ sources
SEC23A(6)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. Cluster 2 →
Delayed sleep phase syndrome Osteoarthritis
1 gene
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1 of 1 corroborated by 2+ sources
CRY1(3)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. —
Osteoarthritis retinitis pigmentosa 18
1 gene
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1 of 1 corroborated by 2+ sources
PRPF3(2)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. Cluster 2 →
Osteoarthritis SNUPN-related muscular dystrophy with or without multi-system involvement
1 gene
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1 of 1 corroborated by 2+ sources
SNUPN(2)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. Cluster 2 →
Osteoarthritis spinocerebellar ataxia type 5
1 gene
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1 of 1 corroborated by 2+ sources
SPTBN2(2)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.