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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Hepatocellular carcinoma Uterine bilocularis
1 gene
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1 of 1 corroborated by 2+ sources
HOXA13(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Lung cancer PCARE-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
PCARE(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatocellular carcinoma phosphoenolpyruvate carboxykinase deficiency, cytosolic
1 gene
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1 of 1 corroborated by 2+ sources
PCK1(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
combined immunodeficiency due to GINS1 deficiency Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
GINS1(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Congenital alpha-fetoprotein deficiency Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
AFP(3)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Lung cancer Majeed syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LPIN2(7)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatocellular carcinoma meier-gorlin syndrome 4
1 gene
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1 of 1 corroborated by 2+ sources
CDT1(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatocellular carcinoma meier-gorlin syndrome 5
1 gene
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1 of 1 corroborated by 2+ sources
CDC6(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatocellular carcinoma meier-gorlin syndrome 6
1 gene
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1 of 1 corroborated by 2+ sources
GMNN(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatocellular carcinoma mitchell syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ACOX1(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatocellular carcinoma Mitochondrial encephalocardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
TMEM70(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Diaphanospondylodysostosis Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
BMPER(6)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
21q22.11q22.12 microdeletion syndrome Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
KIF15(3)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Acetyl-coa carboxylase deficiency Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
ACACA(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Aminoaciduria Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
CLTRN(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
immunodeficiency 18 Lung cancer
1 gene
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1 of 1 corroborated by 2+ sources
CD3E(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatocellular carcinoma immunodeficiency 80 with or without congenital cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
MCM10(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Intellectual developmental disorder dysmorphic facial hearing joint Lung cancer
1 gene
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1 of 1 corroborated by 2+ sources
TET3(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Beck-fahrner syndrome Lung cancer
1 gene
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1 of 1 corroborated by 2+ sources
TET3(6)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
glycogen storage disease VI Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
PYGL(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
glycogen storage disorder due to hepatic glycogen synthase deficiency Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
GYS2(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Citrin deficiency Lung cancer
1 gene
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1 of 1 corroborated by 2+ sources
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
primary ciliary dyskinesia 32 Systemic lupus erythematosus
1 gene
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1 of 1 corroborated by 2+ sources
RSPH3(2)
0.002 1.000 4.25e-2 4.43e-2 ✓ sig. —
Hoxha-aliu syndrome Systemic lupus erythematosus
1 gene
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1 of 1 corroborated by 2+ sources
ERI1(4)
0.002 1.000 4.25e-2 4.43e-2 ✓ sig. —
Dalmatian hypouricemia Systemic lupus erythematosus
1 gene
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1 of 1 corroborated by 2+ sources
0.002 1.000 4.25e-2 4.43e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.