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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
immunodeficiency 115 with autoinflammation Prostatic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
RNF31(2)
0.002 1.000 4.07e-2 4.26e-2 ✓ sig. —
Intellectual developmental disorder seizures polymicrogyria Prostatic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
TCP1(4)
0.002 1.000 4.07e-2 4.26e-2 ✓ sig. Cluster 5 →
developmental and epileptic encephalopathy, 55 Prostatic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
PIGP(2)
0.002 1.000 4.07e-2 4.26e-2 ✓ sig. —
Diffuse cerebral and cerebellar atrophy–intractable seizures–progressive microcephaly syndrome Prostatic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
QARS1(5)
0.002 1.000 4.07e-2 4.26e-2 ✓ sig. —
Dimauro disease Prostatic neoplasms
1 gene
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PGAM2(1)
0.002 1.000 4.07e-2 4.26e-2 ✓ sig. —
Essential pentosuria Prostatic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
DCXR(2)
0.002 1.000 4.07e-2 4.26e-2 ✓ sig. —
Familial telangiectasia cancer syndrome Prostatic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
ATR(2)
0.002 1.000 4.07e-2 4.26e-2 ✓ sig. —
Childhood-onset autosomal recessive slowly progressive spinocerebellar ataxia Prostatic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
TPP1(2)
0.002 1.000 4.07e-2 4.26e-2 ✓ sig. —
Ataxia, combined cerebellar and peripheral, with hearing loss and diabetes mellitus Prostatic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
DNAJC3(2)
0.002 1.000 4.07e-2 4.26e-2 ✓ sig. —
leukodystrophy, hypomyelinating, 18 Prostatic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
DEGS1(2)
0.002 1.000 4.07e-2 4.26e-2 ✓ sig. —
Desanto-shinawi syndrome Prostatic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
WAC(6)
0.002 1.000 4.07e-2 4.26e-2 ✓ sig. —
Corpus callosum agenesis with intellectual disability, coloboma, micrognathia Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
IGBP1(5)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Corpus callosum agenesis with intellectual disability, ocular coloboma, micrognathia Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
IGBP1(3)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Lung cancer Rhizomelic limb shortening with dysmorphic features
1 gene
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1 of 1 corroborated by 2+ sources
PKDCC(5)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatocellular carcinoma Ruijs-aalfs syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPRTN(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatocellular carcinoma spondyloepiphyseal dysplasia, kondo-fu type
1 gene
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1 of 1 corroborated by 2+ sources
MBTPS1(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatocellular carcinoma systemic lupus erythematosus 17
1 gene
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1 of 1 corroborated by 2+ sources
TLR7(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
hand-foot-genital syndrome Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
HOXA13(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatic glycogen synthase deficiency Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
GYS2(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatocellular carcinoma hereditary sclerosing poikiloderma with tendon and pulmonary involvement
1 gene
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1 of 1 corroborated by 2+ sources
FAM111B(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Braddock-carey syndrome Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
KIF15(4)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
C3hex olfactory ability Lung cancer
1 gene
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1 of 1 corroborated by 2+ sources
OR2J3(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. Cluster 20 →
Carnosinemia Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
CNDP1(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatocellular carcinoma Thoracic malformation
1 gene
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1 of 1 corroborated by 2+ sources
FGF4(3)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatocellular carcinoma Urocanate hydratase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
UROC1(7)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.