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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Lymphocytic leukemia Thiamine metabolism dysfunction syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TPK1(4)
0.009 0.500 1.49e-2 1.65e-2 ✓ sig. —
Developmental delay with variable intellectual disability Lymphocytic leukemia
1 gene
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1 of 1 corroborated by 2+ sources
JARID2(5)
0.009 0.500 1.49e-2 1.65e-2 ✓ sig. —
Keratinocyte carcinoma Uncombable hair syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TGM3(6)
0.013 0.333 1.49e-2 1.65e-2 ✓ sig. —
Sclerosing cholangitis Thauvin-robinet-faivre syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FIBP(3)
0.004 1.000 1.49e-2 1.66e-2 ✓ sig. —
Sclerosing cholangitis Xy gonadal dysgenesis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PPP2R3C(2)
0.004 1.000 1.49e-2 1.66e-2 ✓ sig. —
Partial corpus callosum agenesis Sclerosing cholangitis
1 gene
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1 of 1 corroborated by 2+ sources
KPNA7(3)
0.004 1.000 1.49e-2 1.66e-2 ✓ sig. —
Hyaline fibromatosis Sclerosing cholangitis
1 gene
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1 of 1 corroborated by 2+ sources
ANTXR2(3)
0.004 1.000 1.49e-2 1.66e-2 ✓ sig. —
Dental caries X-linked immune dysregulation with inflammatory bowel disease due to elf4 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ELF4(2)
0.004 1.000 1.50e-2 1.66e-2 ✓ sig. —
Dental caries microcornea-myopic chorioretinal atrophy
1 gene
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1 of 1 corroborated by 2+ sources
0.004 1.000 1.50e-2 1.66e-2 ✓ sig. —
Autoinflammatory syndrome, familial, X-linked, Behcet-like 2 Dental caries
1 gene
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1 of 1 corroborated by 2+ sources
ELF4(5)
0.004 1.000 1.50e-2 1.66e-2 ✓ sig. —
autosomal recessive osteopetrosis 8 Dental caries
1 gene
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1 of 1 corroborated by 2+ sources
SNX10(2)
0.004 1.000 1.50e-2 1.66e-2 ✓ sig. —
Dental caries phosphohydroxylysinuria
1 gene
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1 of 1 corroborated by 2+ sources
PHYKPL(2)
0.004 1.000 1.50e-2 1.66e-2 ✓ sig. —
Dental caries netherton syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPINK5(2)
0.004 1.000 1.50e-2 1.66e-2 ✓ sig. —
Dental caries fontaine progeroid syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.004 1.000 1.50e-2 1.66e-2 ✓ sig. —
Dental caries Dyggve-melchior-clausen syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DYM(6)
0.004 1.000 1.50e-2 1.66e-2 ✓ sig. —
Dental caries ITPKB deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ITPKB(2)
0.004 1.000 1.50e-2 1.66e-2 ✓ sig. —
Cannabis abuse Rib fracture
1 gene
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TENM2(1)
0.008 0.500 1.50e-2 1.66e-2 ✓ sig. —
Butyryl-coa dehydrogenase deficiency Cannabis abuse
1 gene
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1 of 1 corroborated by 2+ sources
ACADS(3)
0.008 0.500 1.50e-2 1.66e-2 ✓ sig. —
3-methylcrotonyl-coa carboxylase deficiency Cannabis abuse
1 gene
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1 of 1 corroborated by 2+ sources
MCCC2(5)
0.008 0.500 1.50e-2 1.66e-2 ✓ sig. Cluster 2 →
Fanconi anemia Renal pelvis neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
FANCA(8)
0.022 0.167 1.51e-2 1.67e-2 ✓ sig. —
Circadian rhythm sleep disorder Large artery stroke
1 gene
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CNTN5(1)
0.012 0.333 1.51e-2 1.67e-2 ✓ sig. —
Epilepsy Intellectual developmental disorder dysmorphic seizures
1 gene
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1 of 1 corroborated by 2+ sources
OTUD6B(5)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
Epilepsy Intellectual developmental disorder seizures language
1 gene
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1 of 1 corroborated by 2+ sources
SETD1B(3)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
Epilepsy Juvenile absence epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
EFHC1(3)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
Epilepsy hermansky-pudlak syndrome 4
1 gene
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1 of 1 corroborated by 2+ sources
HPS4(2)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.