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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
autoimmune lymphoproliferative syndrome type 2A Gastric cancer
1 gene
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1 of 1 corroborated by 2+ sources
CASP10(3)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. —
Cardiofacio-neurodevelopmental syndrome Gastric cancer
1 gene
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1 of 1 corroborated by 2+ sources
CCDC32(5)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. Cluster 67 →
friedreich ataxia Gastric cancer
1 gene
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1 of 1 corroborated by 2+ sources
FXN(2)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. Cluster 67 →
Gastric cancer microcornea-myopic chorioretinal atrophy
1 gene
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1 of 1 corroborated by 2+ sources
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. —
Gastric cancer thrombotic disease
1 gene
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1 of 1 corroborated by 2+ sources
MAST2(2)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. Cluster 67 →
Gastric cancer Vici syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EPG5(5)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. —
Chromosomal disorder Clear cell renal cell carcinoma
1 gene
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GRB10(1)
0.017 0.250 1.42e-2 1.58e-2 ✓ sig. —
neuropathy, hereditary sensory and autonomic, type 1C Psychiatric disorders
1 gene
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1 of 1 corroborated by 2+ sources
SPTLC2(2)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. —
KIZ-related retinopathy Psychiatric disorders
1 gene
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1 of 1 corroborated by 2+ sources
KIZ(2)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. —
Early-onset myopathy-areflexia-respiratory distress-dysphagia syndrome Psychiatric disorders
1 gene
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1 of 1 corroborated by 2+ sources
MEGF10(3)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. —
MEGF10-related myopathy Psychiatric disorders
1 gene
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1 of 1 corroborated by 2+ sources
MEGF10(2)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. —
combined immunodeficiency due to CD3gamma deficiency Psychiatric disorders
1 gene
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1 of 1 corroborated by 2+ sources
CD3G(2)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. —
Congenital hereditary facial paralysis with variable hearing loss syndrome Psychiatric disorders
1 gene
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1 of 1 corroborated by 2+ sources
HOXB1(2)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. —
GM3 synthase deficiency Psychiatric disorders
1 gene
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1 of 1 corroborated by 2+ sources
ST3GAL5(2)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. —
Psychiatric disorders Salt and pepper developmental regression syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ST3GAL5(2)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. —
cardiomyopathy, dilated, 2f Psychiatric disorders
1 gene
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1 of 1 corroborated by 2+ sources
BAG5(2)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. Cluster 69 →
Brain abnormalities developmental delay facial dysmorphism intellectual disability syndrome Developmental and epileptic encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
MEF2C(2)
0.005 1.000 1.43e-2 1.59e-2 ✓ sig. —
Developmental and epileptic encephalopathy intellectual developmental disorder 59
1 gene
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1 of 1 corroborated by 2+ sources
CAMK2G(3)
0.005 1.000 1.43e-2 1.59e-2 ✓ sig. —
Developmental and epileptic encephalopathy Intellectual developmental disorder speech ambulation
1 gene
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1 of 1 corroborated by 2+ sources
ACTL6B(5)
0.005 1.000 1.43e-2 1.59e-2 ✓ sig. —
Cerebellar-facial-dental syndrome Developmental and epileptic encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
BRF1(5)
0.005 1.000 1.43e-2 1.59e-2 ✓ sig. —
Cervical dystonia Developmental and epileptic encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
CIZ1(2)
0.005 1.000 1.43e-2 1.59e-2 ✓ sig. —
1q44 microdeletion syndrome Developmental and epileptic encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
HNRNPU(5)
0.005 1.000 1.43e-2 1.59e-2 ✓ sig. Cluster 6 →
Developmental and epileptic encephalopathy neonatal/infantile epilepsy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KCNH5(5)
0.005 1.000 1.43e-2 1.59e-2 ✓ sig. —
Developmental and epileptic encephalopathy Hyperekplexia epilepsy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ARHGEF9(5)
0.005 1.000 1.43e-2 1.59e-2 ✓ sig. —
Developmental and epileptic encephalopathy developmental and epileptic encephalopathy, 41
1 gene
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1 of 1 corroborated by 2+ sources
SLC1A2(7)
0.005 1.000 1.43e-2 1.59e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.