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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Heart disease lysosomal acid lipase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
LIPA(2)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Anxiety disorder Expressive language delay
1 gene
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KLF7(1)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
complex hereditary spastic paraplegia Congenital anomalies of kidney and urinary tract
1 gene
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1 of 1 corroborated by 2+ sources
DSTYK(4)
0.036 0.143 9.51e-3 1.08e-2 ✓ sig. —
Biliary cholangitis Childhood-onset sensorineural hearing impairment
1 gene
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1 of 1 corroborated by 2+ sources
PRORP(2)
0.007 1.000 9.55e-3 1.09e-2 ✓ sig. —
Biliary cholangitis immunodeficiency 19
1 gene
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1 of 1 corroborated by 2+ sources
CD3D(2)
0.007 1.000 9.55e-3 1.09e-2 ✓ sig. —
Biliary cholangitis Inner ear disease
1 gene
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CENPB(1)
0.007 1.000 9.55e-3 1.09e-2 ✓ sig. —
Cone rod dystrophy and hearing loss Cone-rod dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CEP78(6)
0.013 0.500 9.59e-3 1.09e-2 ✓ sig. —
Cone-rod dystrophy Sveinsson chorioretinal atrophy
1 gene
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1 of 1 corroborated by 2+ sources
SEMA4A(6)
0.013 0.500 9.59e-3 1.09e-2 ✓ sig. —
Esophageal neoplasms X-linked lymphoproliferative syndrome
1 gene
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1 of 1 corroborated by 2+ sources
XIAP(5)
0.013 0.500 9.59e-3 1.09e-2 ✓ sig. —
Choroidal melanoma Spondyloepimetaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
DDR2(5)
0.032 0.167 9.70e-3 1.10e-2 ✓ sig. —
15q11.2 microdeletion syndrome Lissencephaly
1 gene
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1 of 1 corroborated by 2+ sources
TUBG1(3)
0.019 0.333 9.71e-3 1.10e-2 ✓ sig. —
17q24.2 microdeletion syndrome Contact dermatitis
1 gene
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1 of 1 corroborated by 2+ sources
PSMD12(3)
0.013 0.500 9.72e-3 1.10e-2 ✓ sig. —
Contact dermatitis Degenerative polyarthritis
1 gene
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1 of 1 corroborated by 2+ sources
TLR8(2)
0.013 0.500 9.72e-3 1.10e-2 ✓ sig. —
Contact dermatitis White spongue nevus
1 gene
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1 of 1 corroborated by 2+ sources
KRT4(6)
0.013 0.500 9.72e-3 1.10e-2 ✓ sig. —
Contact dermatitis Lewis lung carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
TXNRD1(2)
0.013 0.500 9.72e-3 1.10e-2 ✓ sig. Cluster 16 →
lessel-kreienkamp syndrome Myeloid leukemia
1 gene
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1 of 1 corroborated by 2+ sources
AGO2(2)
0.007 1.000 9.74e-3 1.11e-2 ✓ sig. —
leukoencephalopathy, diffuse hereditary, with spheroids 1 Myeloid leukemia
1 gene
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1 of 1 corroborated by 2+ sources
CSF1R(2)
0.007 1.000 9.74e-3 1.11e-2 ✓ sig. —
Aplasia and myelodysplasia Myeloid leukemia
1 gene
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1 of 1 corroborated by 2+ sources
SRP72(4)
0.007 1.000 9.74e-3 1.11e-2 ✓ sig. —
immunodeficiency 64 Myeloid leukemia
1 gene
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1 of 1 corroborated by 2+ sources
RASGRP1(2)
0.007 1.000 9.74e-3 1.11e-2 ✓ sig. —
Early-onset calcifying leukoencephalopathy-skeletal dysplasia Myeloid leukemia
1 gene
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1 of 1 corroborated by 2+ sources
CSF1R(4)
0.007 1.000 9.74e-3 1.11e-2 ✓ sig. —
Myeloid leukemia Neutrophilic leukemia
1 gene
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CSF3R(1)
0.007 1.000 9.74e-3 1.11e-2 ✓ sig. —
Brain abnormalities neurodegeneration dysosteosclerosis Myeloid leukemia
1 gene
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1 of 1 corroborated by 2+ sources
CSF1R(6)
0.007 1.000 9.74e-3 1.11e-2 ✓ sig. —
hypotaurinemic retinal degeneration and cardiomyopathy Myeloid leukemia
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A6(2)
0.007 1.000 9.74e-3 1.11e-2 ✓ sig. Cluster 53 →
Myeloid leukemia thrombocytopenia 2
1 gene
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1 of 1 corroborated by 2+ sources
ANKRD26(2)
0.007 1.000 9.74e-3 1.11e-2 ✓ sig. —
Ataxia with intention tremor and hypotonia Myeloid leukemia
1 gene
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1 of 1 corroborated by 2+ sources
POU4F1(4)
0.007 1.000 9.74e-3 1.11e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.