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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Skin neoplasms sorsby fundus dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
TIMP3(2)
0.007 1.000 9.42e-3 1.07e-2 ✓ sig. —
Mesothelioma non-severe combined immunodeficiency due to COPG1 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
COPG1(2)
0.007 1.000 9.42e-3 1.07e-2 ✓ sig. —
Allergic contact dermatitis Cortisone reductase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HSD11B1(5)
0.013 0.500 9.46e-3 1.08e-2 ✓ sig. —
Craniometadiaphyseal osteosclerosis with hip dysplasia Osteoporosis
1 gene
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1 of 1 corroborated by 2+ sources
AXIN1(4)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Heart disease neutrophil immunodeficiency syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RAC2(3)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Osteomalacia Osteoporosis
1 gene
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1 of 1 corroborated by 2+ sources
MEPE(3)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Hyaline fibromatosis Osteoporosis
1 gene
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1 of 1 corroborated by 2+ sources
ANTXR2(5)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Anxiety disorder PAX5-related B lymphopenia and autism spectrum disorder
1 gene
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1 of 1 corroborated by 2+ sources
PAX5(2)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Osteoporosis purine nucleoside phosphorylase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PNP(3)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Caudal duplication anomaly Osteoporosis
1 gene
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1 of 1 corroborated by 2+ sources
AXIN1(6)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Cervicitis Osteoporosis
1 gene
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IL32(1)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Cholesterol ester storage disease Heart disease
1 gene
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1 of 1 corroborated by 2+ sources
LIPA(6)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Anxiety disorder Chylothorax
1 gene
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1 of 1 corroborated by 2+ sources
PKD1L1(2)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Heart disease immunodeficiency 73b with defective neutrophil chemotaxis and lymphopenia
1 gene
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1 of 1 corroborated by 2+ sources
RAC2(3)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Heart disease immunodeficiency 73c with defective neutrophil chemotaxis and hypogammaglobulinemia
1 gene
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1 of 1 corroborated by 2+ sources
RAC2(3)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Anxiety disorder Intermittent porphyria
1 gene
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1 of 1 corroborated by 2+ sources
HMBS(3)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Anxiety disorder syndromic X-linked intellectual disability Snyder type
1 gene
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1 of 1 corroborated by 2+ sources
SMS(2)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Autoinflammation, antibody deficiency, and immune dysregulation Heart disease
1 gene
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1 of 1 corroborated by 2+ sources
PLCG2(6)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Aica-ribosiduria Osteoporosis
1 gene
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1 of 1 corroborated by 2+ sources
ATIC(3)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Osteoporosis Tolchin-le caignec syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOX6(4)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Anxiety disorder TRAF3 haploinsufficiency
1 gene
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1 of 1 corroborated by 2+ sources
TRAF3(2)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Osteoporosis Vitamin k deficiency
1 gene
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BGLAP(1)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Heart disease Wolman disease
1 gene
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1 of 1 corroborated by 2+ sources
LIPA(5)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Osteoporosis Zaki syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WLS(3)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Anxiety disorder leukemia, acute lymphoblastic, susceptibility to, 3
1 gene
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1 of 1 corroborated by 2+ sources
PAX5(2)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.