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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Immunodeficiency immunodeficiency 31b
1 gene
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1 of 1 corroborated by 2+ sources
STAT1(6)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Immunodeficiency immunodeficiency 37
1 gene
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1 of 1 corroborated by 2+ sources
BCL10(6)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Immunodeficiency immunodeficiency 53
1 gene
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1 of 1 corroborated by 2+ sources
RELB(5)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 10 →
Immunodeficiency immunodeficiency 61
1 gene
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1 of 1 corroborated by 2+ sources
SH3KBP1(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Immunodeficiency immunodeficiency 62
1 gene
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1 of 1 corroborated by 2+ sources
ARHGEF1(5)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Immunodeficiency immunodeficiency 64
1 gene
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1 of 1 corroborated by 2+ sources
RASGRP1(5)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Immunodeficiency immunodeficiency 65, susceptibility to viral infections
1 gene
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1 of 1 corroborated by 2+ sources
IRF9(5)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 10 →
Immunodeficiency immunodeficiency 72 with autoinflammation
1 gene
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1 of 1 corroborated by 2+ sources
NCKAP1L(5)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Immunodeficiency immunodeficiency 73b with defective neutrophil chemotaxis and lymphopenia
1 gene
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1 of 1 corroborated by 2+ sources
RAC2(6)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Immunodeficiency immunodeficiency 73c with defective neutrophil chemotaxis and hypogammaglobulinemia
1 gene
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1 of 1 corroborated by 2+ sources
RAC2(6)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Immunodeficiency immunodeficiency 76
1 gene
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1 of 1 corroborated by 2+ sources
FCHO1(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Immunodeficiency immunodeficiency 78 with autoimmunity and developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
TPP2(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
immunodeficiency 78 with autoimmunity and developmental delay Thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
TPP2(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Immunodeficiency immunodeficiency 80 with or without congenital cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
MCM10(5)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 10 →
Immunodeficiency immunodeficiency 81
1 gene
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1 of 1 corroborated by 2+ sources
LCP2(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 10 →
Immunodeficiency immunodeficiency 87 and autoimmunity
1 gene
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1 of 1 corroborated by 2+ sources
DEF6(5)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 10 →
Immunodeficiency immunodeficiency 96
1 gene
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1 of 1 corroborated by 2+ sources
LIG1(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 10 →
IMPDH1-related retinopathy Pelvic organ prolapse
1 gene
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1 of 1 corroborated by 2+ sources
IMPDH1(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Colorectal adenoma Intellectual developmental disorder autism speech dysmorphic
1 gene
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1 of 1 corroborated by 2+ sources
CHD1(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Immunodeficiency Intellectual developmental disorder dysmorphic skeletal hair
1 gene
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1 of 1 corroborated by 2+ sources
BCL11B(5)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Immunodeficiency Intellectual developmental disorder speech dysmorphic t-cell
1 gene
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1 of 1 corroborated by 2+ sources
BCL11B(6)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
intellectual developmental disorder, autosomal recessive 75, with neuropsychiatric features and variant lissencephaly Renal cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
PIDD1(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Cholelithiasis jaberi-elahi syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GTPBP2(3)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Dock2 deficiency Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
DOCK2(6)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Colorectal adenoma Enteropathy
1 gene
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1 of 1 corroborated by 2+ sources
SLCO2A1(3)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.