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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cleft palate psychomotor retardation distinctive facial features Non-small-cell lung carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
KDM1A(3)
0.007 1.000 8.90e-3 1.03e-2 ✓ sig. —
Non-small-cell lung carcinoma palatal anomalies-widely spaced teeth-facial dysmorphism-developmental delay syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KDM1A(2)
0.007 1.000 8.90e-3 1.03e-2 ✓ sig. —
Non-small-cell lung carcinoma Prognathism
1 gene
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1 of 1 corroborated by 2+ sources
ADAMTS1(2)
0.007 1.000 8.90e-3 1.03e-2 ✓ sig. —
Parenchymal hematoma Skeletal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SEMA3A(2)
0.034 0.167 8.93e-3 1.03e-2 ✓ sig. —
Cole-carpenter syndrome Retinal detachment
1 gene
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1 of 1 corroborated by 2+ sources
CRTAP(3)
0.020 0.333 8.94e-3 1.03e-2 ✓ sig. —
combined immunodeficiency due to CD3gamma deficiency Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
CD3G(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 10 →
combined immunodeficiency due to GINS1 deficiency Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
GINS1(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 10 →
combined immunodeficiency due to MALT1 deficiency Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
MALT1(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
combined immunodeficiency due to moesin deficiency Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
MSN(3)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 10 →
combined immunodeficiency due to OX40 deficiency Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
TNFRSF4(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 10 →
combined immunodeficiency due to STK4 deficiency Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
STK4(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 10 →
combined immunodeficiency due to ZAP70 deficiency Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
ZAP70(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
congenital disorder of glycosylation type II Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
ATP6AP1(6)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Cholelithiasis Congenital microvillous atrophy
1 gene
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1 of 1 corroborated by 2+ sources
MYO5B(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
renal hypomagnesemia 3 Thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
CLDN16(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Immunodeficiency severe combined immunodeficiency due to CARMIL2 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CARMIL2(3)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 10 →
Immunodeficiency severe combined immunodeficiency due to CORO1A deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CORO1A(3)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Immunodeficiency severe combined immunodeficiency due to CTPS1 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CTPS1(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 10 →
Immunodeficiency severe combined immunodeficiency due to DNA-PKcs deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PRKDC(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Immunodeficiency severe combined immunodeficiency due to LAT deficiency
1 gene
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1 of 1 corroborated by 2+ sources
LAT(3)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Immunodeficiency severe combined immunodeficiency due to LCK deficiency
1 gene
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1 of 1 corroborated by 2+ sources
LCK(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 10 →
Pelvic organ prolapse severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-negative, due to adenosine deaminase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ADA(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Immunodeficiency susceptibility to respiratory infections associated with CD8alpha chain mutation
1 gene
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1 of 1 corroborated by 2+ sources
CD8A(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
2,8-dihydroxyadenine urolithiasis Renal cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
APRT(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Acyl-coa binding domain containing protein 5 deficiency Thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
ACBD5(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.