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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Myopia neurodevelopmental disorder with or without seizures and gait abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
GRIA4(3)
0.007 1.000 8.64e-3 9.97e-3 ✓ sig. Cluster 12 →
hartnup disease Myopia
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A19(2)
0.007 1.000 8.64e-3 9.97e-3 ✓ sig. —
Autonomic nervous system disease Hirschsprung disease
1 gene
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1 of 1 corroborated by 2+ sources
ECE1(5)
0.014 0.500 8.68e-3 1.00e-2 ✓ sig. —
Camos syndrome Hirschsprung disease
1 gene
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1 of 1 corroborated by 2+ sources
ZNF592(2)
0.014 0.500 8.68e-3 1.00e-2 ✓ sig. —
Carbohydrate deficient glycoprotein syndrome Hirschsprung disease
1 gene
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TMEM165(1)
0.014 0.500 8.68e-3 1.00e-2 ✓ sig. —
Macular degeneration Microphthalmia with retinitis pigmentosa and ocular anomalies
1 gene
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1 of 1 corroborated by 2+ sources
C1QTNF5(2)
0.014 0.500 8.68e-3 1.00e-2 ✓ sig. —
Irritable bowel syndrome polycystic kidney disease 3 with or without polycystic liver disease
1 gene
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1 of 1 corroborated by 2+ sources
GANAB(2)
0.007 1.000 8.70e-3 1.00e-2 ✓ sig. —
Irritable bowel syndrome nizon-isidor syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MED12L(2)
0.007 1.000 8.70e-3 1.00e-2 ✓ sig. —
Congenital myopathy Malignant glioma
1 gene
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1 of 1 corroborated by 2+ sources
PAX7(4)
0.021 0.333 8.74e-3 1.01e-2 ✓ sig. —
Salt-sensitive hypertension Thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
CYP3A5(2)
0.021 0.333 8.74e-3 1.01e-2 ✓ sig. —
Galactosialidosis Non-immune hydrops fetalis
1 gene
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1 of 1 corroborated by 2+ sources
CTSA(4)
0.021 0.333 8.74e-3 1.01e-2 ✓ sig. —
friedreich ataxia Non-hodgkins lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
FXN(2)
0.007 1.000 8.77e-3 1.01e-2 ✓ sig. Cluster 67 →
glycosylphosphatidylinositol biosynthesis defect 21 Non-hodgkins lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
PIGU(2)
0.007 1.000 8.77e-3 1.01e-2 ✓ sig. —
Chromosome 20q11-q12 deletion syndrome Non-hodgkins lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
EPB41L1(3)
0.007 1.000 8.77e-3 1.01e-2 ✓ sig. —
autosomal agammaglobulinemia Non-hodgkins lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
TCF3(2)
0.007 1.000 8.77e-3 1.01e-2 ✓ sig. —
Ataxia, spastic, autosomal recessive Combined oxidative phosphorylation deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MARS2(6)
0.014 0.500 8.81e-3 1.02e-2 ✓ sig. —
Hyperprolinemia Nervous system disease
1 gene
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1 of 1 corroborated by 2+ sources
PRODH(6)
0.014 0.500 8.81e-3 1.02e-2 ✓ sig. —
Nervous system disease Omodysplasia
1 gene
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1 of 1 corroborated by 2+ sources
GPC6(6)
0.014 0.500 8.81e-3 1.02e-2 ✓ sig. —
Combined oxidative phosphorylation deficiency Sandhoff disease
1 gene
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1 of 1 corroborated by 2+ sources
GFM2(5)
0.014 0.500 8.81e-3 1.02e-2 ✓ sig. Cluster 50 →
Appendiceal disorder Glioblastoma
2 genes
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FFAR2(1), KRTDAP(1)
0.003 0.500 8.83e-3 1.02e-2 ✓ sig. —
Non-small-cell lung carcinoma Riddle syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RNF168(7)
0.007 1.000 8.90e-3 1.03e-2 ✓ sig. —
immunodeficiency, common variable, 5 Non-small-cell lung carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
MS4A1(2)
0.007 1.000 8.90e-3 1.03e-2 ✓ sig. —
neurodevelopmental disorder with cardiomyopathy, spasticity, and brain abnormalities Non-small-cell lung carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
SHMT2(2)
0.007 1.000 8.90e-3 1.03e-2 ✓ sig. —
Non-small-cell lung carcinoma Weiss-kruszka syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ZNF462(6)
0.007 1.000 8.90e-3 1.03e-2 ✓ sig. —
Non-small-cell lung carcinoma xeroderma pigmentosum group C
1 gene
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1 of 1 corroborated by 2+ sources
XPC(2)
0.007 1.000 8.90e-3 1.03e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.