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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
complex neurodevelopmental disorder Intellectual developmental disorder dysmorphic
1 gene
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1 of 1 corroborated by 2+ sources
POU3F3(2)
0.008 1.000 7.66e-3 8.95e-3 ✓ sig. Cluster 6 →
complex neurodevelopmental disorder Intellectual developmental disorder dysmorphic hypotonia
1 gene
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1 of 1 corroborated by 2+ sources
KMT5B(2)
0.008 1.000 7.66e-3 8.95e-3 ✓ sig. —
complex neurodevelopmental disorder Intellectual developmental disorder growth behavioral
1 gene
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1 of 1 corroborated by 2+ sources
PPP2R5D(2)
0.008 1.000 7.66e-3 8.95e-3 ✓ sig. —
complex neurodevelopmental disorder Intellectual developmental disorder macrocephaly hypotonia behavioral
1 gene
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1 of 1 corroborated by 2+ sources
PPP2R5D(2)
0.008 1.000 7.66e-3 8.95e-3 ✓ sig. —
complex neurodevelopmental disorder Intellectual developmental disorder seizures epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
AP2M1(3)
0.008 1.000 7.66e-3 8.95e-3 ✓ sig. —
complex neurodevelopmental disorder Intellectual developmental disorder seizures language
1 gene
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1 of 1 corroborated by 2+ sources
SETD1B(4)
0.008 1.000 7.66e-3 8.95e-3 ✓ sig. —
complex neurodevelopmental disorder Intellectual developmental disorder short stature behavioral
1 gene
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1 of 1 corroborated by 2+ sources
IQSEC1(5)
0.008 1.000 7.66e-3 8.95e-3 ✓ sig. —
1q44 microdeletion syndrome complex neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
HNRNPU(3)
0.008 1.000 7.66e-3 8.95e-3 ✓ sig. Cluster 6 →
complex neurodevelopmental disorder pseudohypoaldosteronism type 2E
1 gene
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CUL3(1)
0.008 1.000 7.66e-3 8.95e-3 ✓ sig. —
Atypical absence seizure Nonsyndromic hearing loss
1 gene
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ADPRS(1)
0.008 1.000 7.66e-3 8.95e-3 ✓ sig. —
autosomal recessive nonsyndromic hearing loss 102 Nonsyndromic hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
EPS8(4)
0.008 1.000 7.66e-3 8.95e-3 ✓ sig. Cluster 26 →
autosomal recessive nonsyndromic hearing loss 63 Nonsyndromic hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
LRTOMT(2)
0.008 1.000 7.66e-3 8.95e-3 ✓ sig. Cluster 26 →
Male infertility round headed spermatozoa Substance-induced psychosis
1 gene
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1 of 1 corroborated by 2+ sources
PICK1(2)
0.042 0.143 7.70e-3 9.00e-3 ✓ sig. —
Hypotrichosis Peeling skin syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CDSN(7)
0.042 0.143 7.70e-3 9.00e-3 ✓ sig. —
Graft versus host disease Larsen syndrome
1 gene
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1 of 1 corroborated by 2+ sources
XYLT1(2)
0.042 0.143 7.70e-3 9.00e-3 ✓ sig. —
Graft versus host disease Male reproductive organ cancer
1 gene
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LRATD1(1)
0.042 0.143 7.70e-3 9.00e-3 ✓ sig. —
Atherosclerosis Gastroschisis
1 gene
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ADD1(1)
0.008 1.000 7.73e-3 9.02e-3 ✓ sig. —
Atherosclerosis glycogen storage disease III
1 gene
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1 of 1 corroborated by 2+ sources
AGL(2)
0.008 1.000 7.73e-3 9.02e-3 ✓ sig. —
autosomal recessive nonsyndromic hearing loss 102 Isolated sensorineural deafness
1 gene
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1 of 1 corroborated by 2+ sources
EPS8(2)
0.008 1.000 7.73e-3 9.02e-3 ✓ sig. Cluster 26 →
autosomal recessive nonsyndromic hearing loss 63 Isolated sensorineural deafness
1 gene
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1 of 1 corroborated by 2+ sources
LRTOMT(2)
0.008 1.000 7.73e-3 9.02e-3 ✓ sig. Cluster 26 →
Isolated sensorineural deafness Worster drought syndrome
1 gene
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TMTC4(1)
0.008 1.000 7.73e-3 9.02e-3 ✓ sig. Cluster 26 →
Atherosclerosis congenital disorder of glycosylation, type iit
1 gene
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1 of 1 corroborated by 2+ sources
GALNT2(2)
0.008 1.000 7.73e-3 9.02e-3 ✓ sig. —
Atherosclerosis Congenital malabsorptive diarrhea
1 gene
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1 of 1 corroborated by 2+ sources
NEUROG3(3)
0.008 1.000 7.73e-3 9.02e-3 ✓ sig. —
Atherosclerosis Congenital malabsorptive diarrhea with diabetes mellitus and combined pituitary hormone deficiency
1 gene
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1 of 1 corroborated by 2+ sources
NEUROG3(2)
0.008 1.000 7.73e-3 9.02e-3 ✓ sig. —
hearing loss, autosomal recessive 119 Isolated sensorineural deafness
1 gene
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1 of 1 corroborated by 2+ sources
AFG2B(2)
0.008 1.000 7.73e-3 9.02e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.