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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Spermatogenic failure spermatogenic failure 5
1 gene
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1 of 1 corroborated by 2+ sources
AURKC(3)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Cerebellar ataxia spinocerebellar ataxia type 42
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1G(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. Cluster 79 →
Cerebellar ataxia spinocerebellar ataxia type 5
1 gene
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1 of 1 corroborated by 2+ sources
SPTBN2(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Cerebellar ataxia spinocerebellar ataxia, autosomal recessive 23
1 gene
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1 of 1 corroborated by 2+ sources
TDP2(3)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. Cluster 79 →
Spermatogenic failure stankiewicz-isidor syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PSMD12(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Premature ovarian failure SYCE1-related gametogenic failure
1 gene
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1 of 1 corroborated by 2+ sources
SYCE1(5)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. Cluster 31 →
Spermatogenic failure SYCE1-related gametogenic failure
1 gene
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1 of 1 corroborated by 2+ sources
SYCE1(6)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. Cluster 31 →
HAND2 related congenital heart defect Tetralogy of fallot
1 gene
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1 of 1 corroborated by 2+ sources
HAND2(3)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Helsmoortel-van der aa syndrome Tetralogy of fallot
1 gene
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1 of 1 corroborated by 2+ sources
ADNP(3)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Hyperprolactinemia Premature ovarian failure
1 gene
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1 of 1 corroborated by 2+ sources
PRLR(4)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
lessel-kreienkamp syndrome Premature ovarian failure
1 gene
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1 of 1 corroborated by 2+ sources
AGO2(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Male infertility motility disorder Spermatogenic failure
1 gene
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1 of 1 corroborated by 2+ sources
CCDC146(3)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
MCM9-related gametogenic failure Premature ovarian failure
1 gene
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1 of 1 corroborated by 2+ sources
MCM9(3)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Cerebellar ataxia megalencephalic leukoencephalopathy with subcortical cysts 1
1 gene
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1 of 1 corroborated by 2+ sources
MLC1(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
PLD1-related congenital heart disease Tetralogy of fallot
1 gene
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1 of 1 corroborated by 2+ sources
PLD1(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Cerebellar ataxia POLR1C-related disorder
1 gene
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1 of 1 corroborated by 2+ sources
POLR1C(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Cerebellar ataxia POLR3B-related disorder
1 gene
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1 of 1 corroborated by 2+ sources
POLR3B(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
primary ciliary dyskinesia 20 Tetralogy of fallot
1 gene
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1 of 1 corroborated by 2+ sources
ODAD1(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Premature ovarian failure primordial dwarfism-immunodeficiency-lipodystrophy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PRIM1(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Premature ovarian failure Prognathism
1 gene
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1 of 1 corroborated by 2+ sources
ADAMTS1(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Premature ovarian failure RAD51C-related cancer predisposition
1 gene
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1 of 1 corroborated by 2+ sources
RAD51C(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
Congenitally uncorrected transposition of the great arteries Tetralogy of fallot
1 gene
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1 of 1 corroborated by 2+ sources
CFC1(2)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
arrhythmogenic cardiomyopathy with variable ectodermal abnormalities Tetralogy of fallot
1 gene
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1 of 1 corroborated by 2+ sources
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
autosomal dominant cerebellar ataxia Cerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
NPTX1(3)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. —
autosomal recessive cerebellar ataxia Cerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
CWF19L1(4)
0.009 1.000 7.40e-3 8.70e-3 ✓ sig. Cluster 79 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.