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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Autoinflammatory syndrome with cytopenia, hyperzincemia, and hypercalprotectinemia Behcet disease
1 gene
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1 of 1 corroborated by 2+ sources
PSTPIP1(2)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —
Benign essential blepharospasm Bipolar depression
1 gene
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1 of 1 corroborated by 2+ sources
DRD5(2)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —
Bipolar depression Neurogenic bladder
1 gene
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1 of 1 corroborated by 2+ sources
CHRM2(2)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —
Bipolar depression X-linked epilepsy with or without intellectual disability and dysmorphic features
1 gene
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1 of 1 corroborated by 2+ sources
GABRA3(4)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —
Behcet disease Papa syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PSTPIP1(2)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —
Bipolar depression schuurs-hoeijmakers syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PACS1(2)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —
Behcet disease seckel syndrome 10
1 gene
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1 of 1 corroborated by 2+ sources
NSMCE2(2)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —
Adenosine deaminase 2 deficiency Behcet disease
1 gene
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1 of 1 corroborated by 2+ sources
ADA2(4)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —
Angiocentric glioma Myeloproliferative disorder
1 gene
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1 of 1 corroborated by 2+ sources
MYB(2)
0.018 0.500 6.87e-3 8.15e-3 ✓ sig. —
Candle syndrome Hyperthyroidism
1 gene
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1 of 1 corroborated by 2+ sources
PSMB8(2)
0.018 0.500 6.87e-3 8.15e-3 ✓ sig. —
Cystic leukoencephalopathy Hyperthyroidism
1 gene
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1 of 1 corroborated by 2+ sources
RNASET2(4)
0.018 0.500 6.87e-3 8.15e-3 ✓ sig. —
Giant axonal neuropathy Peripheral nervous system disease
1 gene
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1 of 1 corroborated by 2+ sources
GAN(7)
0.018 0.500 6.87e-3 8.15e-3 ✓ sig. Cluster 243 →
Congenital anomalies of the kidney and urinary tract Ochoa syndrome
1 gene
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HPSE2(1)
0.018 0.500 6.87e-3 8.15e-3 ✓ sig. —
Congenital anomalies of the kidney and urinary tract Townes-brocks syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SALL1(7)
0.018 0.500 6.87e-3 8.15e-3 ✓ sig. —
Congenital anomalies of the kidney and urinary tract Urofacial syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HPSE2(6)
0.018 0.500 6.87e-3 8.15e-3 ✓ sig. —
Demyelinating leukodystrophy Microcephaly
1 gene
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1 of 1 corroborated by 2+ sources
LMNB1(4)
0.009 1.000 6.88e-3 8.16e-3 ✓ sig. —
Amish lethal microcephaly Microcephaly
1 gene
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1 of 1 corroborated by 2+ sources
0.009 1.000 6.88e-3 8.16e-3 ✓ sig. —
Microcephaly neurodevelopmental disorder with microcephaly and dysmorphic facies
1 gene
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1 of 1 corroborated by 2+ sources
SPOP(2)
0.009 1.000 6.88e-3 8.16e-3 ✓ sig. —
Microcephaly neurodevelopmental disorder with relative macrocephaly and with or without cardiac or endocrine anomalies
1 gene
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1 of 1 corroborated by 2+ sources
SPOP(2)
0.009 1.000 6.88e-3 8.16e-3 ✓ sig. —
Diffuse cerebral and cerebellar atrophy–intractable seizures–progressive microcephaly syndrome Microcephaly
1 gene
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1 of 1 corroborated by 2+ sources
QARS1(6)
0.009 1.000 6.88e-3 8.16e-3 ✓ sig. Cluster 101 →
Dna replication fork stabilization factor donson-related microcephaly, short stature, limb abnormalities spectrum Microcephaly
1 gene
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1 of 1 corroborated by 2+ sources
DONSON(6)
0.009 1.000 6.88e-3 8.16e-3 ✓ sig. —
Genetic syndromic pierre robin syndrome Microcephaly
1 gene
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EFTUD2(1)
0.009 1.000 6.88e-3 8.16e-3 ✓ sig. —
goldberg-shprintzen syndrome Microcephaly
1 gene
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1 of 1 corroborated by 2+ sources
KIFBP(3)
0.009 1.000 6.88e-3 8.16e-3 ✓ sig. —
microcephalic primordial dwarfism due to RTTN deficiency Microcephaly
1 gene
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1 of 1 corroborated by 2+ sources
RTTN(4)
0.009 1.000 6.88e-3 8.16e-3 ✓ sig. —
Microcephaly microcephaly 26, primary, autosomal dominant
1 gene
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1 of 1 corroborated by 2+ sources
LMNB1(5)
0.009 1.000 6.88e-3 8.16e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.