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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Hereditary spastic paraplegia neuropathy, hereditary sensory, type 1D
1 gene
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1 of 1 corroborated by 2+ sources
ATL1(2)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Hereditary spastic paraplegia renpenning syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PQBP1(3)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Lung disease severe combined immunodeficiency due to DNA-PKcs deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PRKDC(3)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Hereditary spastic paraplegia Spastic ataxia of charlevoix-saguenay
1 gene
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1 of 1 corroborated by 2+ sources
SACS(2)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Hereditary spastic paraplegia T-B+ severe combined immunodeficiency due to JAK3 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
JAK3(2)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Ataxia, spastic, autosomal recessive with optic atrophy and impaired intellect Hereditary spastic paraplegia
1 gene
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SACS(1)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Autoinflammation and autoimmunity, systemic, with immune dysregulation 1 Lung disease
1 gene
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1 of 1 corroborated by 2+ sources
COPA(2)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Lung disease lung disease, immunodeficiency, and chromosome breakage syndrome;
1 gene
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1 of 1 corroborated by 2+ sources
NSMCE3(5)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. Cluster 119 →
Cardioembolic stroke Tritanopia
1 gene
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1 of 1 corroborated by 2+ sources
OPN1SW(4)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Hereditary spastic paraplegia Troyer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPART(4)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Allan-herndon-dudley syndrome Hereditary spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
SLC16A2(3)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. Cluster 244 →
ALS2-related motor neuron disease Hereditary spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
ALS2(2)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Cardioembolic stroke cardiomyopathy, dilated, 2d
1 gene
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1 of 1 corroborated by 2+ sources
RPL3L(2)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Hereditary spastic paraplegia Paraparesis
1 gene
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1 of 1 corroborated by 2+ sources
TECPR2(2)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Lung disease primary ciliary dyskinesia 29
1 gene
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1 of 1 corroborated by 2+ sources
CCNO(3)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Congenital hypopituitarism Lung disease
1 gene
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1 of 1 corroborated by 2+ sources
FOXA2(2)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Parenchymal hematoma Prion disease
1 gene
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SEMA3A(1)
0.043 0.167 6.61e-3 7.87e-3 ✓ sig. —
Marinesco-sjogren syndrome Strabismus
1 gene
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1 of 1 corroborated by 2+ sources
SIL1(6)
0.027 0.333 6.61e-3 7.88e-3 ✓ sig. —
15q13.3 microdeletion syndrome Memory disorders
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA7(5)
0.019 0.500 6.61e-3 7.88e-3 ✓ sig. —
Charcot-Marie-Tooth disease, demyelinating, type 1J Long qt syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ITPR3(2)
0.010 1.000 6.62e-3 7.89e-3 ✓ sig. —
immunodeficiency 97 with autoinflammation Long qt syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PIK3CG(2)
0.010 1.000 6.62e-3 7.89e-3 ✓ sig. —
Intellectual developmental disorder seizures dysmorphic gait Long qt syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WDR26(2)
0.010 1.000 6.62e-3 7.89e-3 ✓ sig. —
familial isolated arrhythmogenic right ventricular dysplasia Long qt syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DSC2(2)
0.010 1.000 6.62e-3 7.89e-3 ✓ sig. Cluster 4 →
dilated cardiomyopathy 1CC Long qt syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NEXN(2)
0.010 1.000 6.62e-3 7.89e-3 ✓ sig. Cluster 4 →
dilated cardiomyopathy 1W Long qt syndrome
1 gene
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1 of 1 corroborated by 2+ sources
VCL(2)
0.010 1.000 6.62e-3 7.89e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.