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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Hemorrhagic stroke Thyroid neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
PDGFA(2)
0.021 0.500 5.97e-3 7.19e-3 ✓ sig. —
Intellectual developmental disorder seizures speech Thyroid neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
PAK1(4)
0.021 0.500 5.97e-3 7.19e-3 ✓ sig. —
Myelodysplastic syndrome Temple syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DLK1(3)
0.021 0.500 5.97e-3 7.19e-3 ✓ sig. —
Cerebral palsy Congenital anosmia
1 gene
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1 of 1 corroborated by 2+ sources
TENM1(2)
0.021 0.500 5.97e-3 7.19e-3 ✓ sig. —
Distal spinal muscular atrophy multiple acyl-CoA dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ETFDH(2)
0.029 0.333 6.03e-3 7.26e-3 ✓ sig. Cluster 15 →
Congenital microcephaly Pseudo-torch syndrome
1 gene
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1 of 1 corroborated by 2+ sources
OCLN(6)
0.029 0.333 6.03e-3 7.26e-3 ✓ sig. —
Auditory neuropathy Genetic neurodegenerative disease
1 gene
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KIF5A(1)
0.029 0.333 6.03e-3 7.26e-3 ✓ sig. —
Fatty liver long chain 3-hydroxyacyl-coa dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HADHA(2)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Fatty liver mitochondrial trifunctional protein deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HADHB(3)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Fatty liver Mucoepithelial dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SREBF1(3)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Axonal neuropathy Digestive system disease
1 gene
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GBF1(1)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Digestive system disease Dock2 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DOCK2(4)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
congenital disorder of glycosylation, type iit Fatty liver
1 gene
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1 of 1 corroborated by 2+ sources
GALNT2(2)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
C syndrome Digestive system disease
1 gene
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1 of 1 corroborated by 2+ sources
CD96(7)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Abetalipoproteinemia Fatty liver
1 gene
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1 of 1 corroborated by 2+ sources
MTTP(3)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Fatty liver Oxysterol accumulation disorder
1 gene
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1 of 1 corroborated by 2+ sources
CYP7B1(3)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Fatty liver Urban-schosser-spohr syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SREBF1(2)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Fatty liver X-linked ichthyosis with steryl-sulfatase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
STS(3)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Corticosteroid-binding globulin deficiency Fatty liver
1 gene
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1 of 1 corroborated by 2+ sources
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Digestive system disease Intestinal dysmotility syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ANO1(4)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Digestive system disease Isolated anhidrosis
1 gene
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1 of 1 corroborated by 2+ sources
ITPR2(3)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Digestive system disease nephrotic syndrome 14
1 gene
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1 of 1 corroborated by 2+ sources
SGPL1(2)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Digestive system disease nizon-isidor syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MED12L(2)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Camos syndrome Mitral valve prolapse
1 gene
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1 of 1 corroborated by 2+ sources
ZNF592(2)
0.020 0.500 6.10e-3 7.33e-3 ✓ sig. —
Lymphatic system disease Rolandic epilepsy
1 gene
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PTPRM(1)
0.020 0.500 6.10e-3 7.33e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.