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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Intellectual disability mucopolysaccharidosis type 3B
1 gene
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1 of 1 corroborated by 2+ sources
NAGLU(2)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Intellectual disability Partial corpus callosum agenesis
1 gene
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1 of 1 corroborated by 2+ sources
KPNA7(2)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
glutamate pyruvate transaminase 2 deficiency Intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
GPT2(2)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. Cluster 6 →
Alpha-2-plasmin inhibitor deficiency Hypogonadism
1 gene
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1 of 1 corroborated by 2+ sources
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
amyotrophic lateral sclerosis type 15 Hypogonadism
1 gene
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1 of 1 corroborated by 2+ sources
UBQLN2(2)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. Cluster 54 →
Intellectual disability NAA10-related syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NAA10(2)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Hypogonadism X-linked adrenal hypoplasia congenita
1 gene
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1 of 1 corroborated by 2+ sources
NR0B1(4)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Intellectual disability severe intellectual disability-poor language-strabismus-grimacing face-long fingers syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATAD2B(5)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Intellectual disability spinocerebellar ataxia type 42
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1G(2)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Intellectual disability Temple-baraitser syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KCNH1(5)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
immunodeficiency 92 Inflammatory skin disease
1 gene
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1 of 1 corroborated by 2+ sources
REL(2)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
intellectual developmental disorder 59 Intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
CAMK2G(2)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Intellectual developmental disorder hypotonia spastic sleep Intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
ANK3(3)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Inflammatory skin disease Intellectual developmental disorder neuropsychiatric
1 gene
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1 of 1 corroborated by 2+ sources
SLC45A1(4)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. Cluster 252 →
Intellectual disability Iodide peroxidase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TPO(2)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Hypogonadism Isolated follicle-stimulating hormone deficiency
1 gene
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1 of 1 corroborated by 2+ sources
FSHB(2)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Intellectual disability KCNH1 associated disorder
1 gene
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1 of 1 corroborated by 2+ sources
KCNH1(2)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Chromosome 2p16.3 deletion syndrome Intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
NRXN1(2)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Biotinidase deficiency Inflammatory skin disease
1 gene
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1 of 1 corroborated by 2+ sources
BTD(8)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Bjornstad syndrome Intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
BCS1L(6)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Brachydactyly with hypertension Hypogonadism
1 gene
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1 of 1 corroborated by 2+ sources
PDE3A(3)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Cutaneous lupus erythematosus Peeling skin syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.056 0.143 4.99e-3 6.12e-3 ✓ sig. —
Post-operative acute kidney injury Renal hypertension
1 gene
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1 of 1 corroborated by 2+ sources
HSPA8(2)
0.056 0.143 4.99e-3 6.12e-3 ✓ sig. —
Hermansky-pudlak syndrome Sensory peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
DTNBP1(7)
0.056 0.143 4.99e-3 6.12e-3 ✓ sig. —
Amphetamine or sympathomimetic abuse Congenital microvillous atrophy
1 gene
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1 of 1 corroborated by 2+ sources
MYO5B(3)
0.013 1.000 5.00e-3 6.13e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.