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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Androgenetic alopecia Appendiceal disorder
2 genes
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MND1(1), TMEM131L(1)
0.005 0.500 4.06e-3 5.12e-3 ✓ sig. —
Distal renal tubular acidosis Hypomaturation amelogenesis imperfecta
1 gene
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1 of 1 corroborated by 2+ sources
WDR72(2)
0.063 0.143 4.09e-3 5.16e-3 ✓ sig. —
Male infertility testicular dysgenesis Postaxial polydactyly
1 gene
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KIF7(1)
0.042 0.333 4.09e-3 5.16e-3 ✓ sig. —
Beta thalassemia Dias-logan syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BCL11A(4)
0.042 0.333 4.09e-3 5.16e-3 ✓ sig. —
Brain malformations Congenital anomalies of kidney and urinary tract
1 gene
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SON(1)
0.042 0.333 4.09e-3 5.16e-3 ✓ sig. —
Hmg-coa synthase deficiency Mouth neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
HMGCS2(3)
0.016 1.000 4.09e-3 5.16e-3 ✓ sig. Cluster 5 →
Brugada syndrome hypokalemic alkalosis, familial, with specific renal tubulopathy
1 gene
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1 of 1 corroborated by 2+ sources
KCNJ16(2)
0.016 1.000 4.09e-3 5.16e-3 ✓ sig. Cluster 4 →
Brugada syndrome Chromosome 2p16.1-p15 deletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
USP34(2)
0.016 1.000 4.09e-3 5.16e-3 ✓ sig. —
Carpal tunnel syndrome Comp-related skeletal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
COMP(5)
0.016 1.000 4.09e-3 5.16e-3 ✓ sig. —
Intellectual developmental disorder seizures movement Mouth neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
PDE2A(4)
0.016 1.000 4.09e-3 5.16e-3 ✓ sig. —
Conotruncal cardiac defect Intellectual developmental disorder short stature behavioral
1 gene
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1 of 1 corroborated by 2+ sources
IQSEC1(5)
0.016 1.000 4.09e-3 5.16e-3 ✓ sig. —
Carpal tunnel syndrome Copper metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
CCS(2)
0.016 1.000 4.09e-3 5.16e-3 ✓ sig. Cluster 345 →
Bilateral congenital vertical talus Mouth neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
HOXD10(2)
0.016 1.000 4.09e-3 5.16e-3 ✓ sig. —
Brugada syndrome dilated cardiomyopathy 1JJ
1 gene
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1 of 1 corroborated by 2+ sources
LAMA4(2)
0.016 1.000 4.09e-3 5.16e-3 ✓ sig. Cluster 4 →
Mouth neoplasms Triose phosphate isomerase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TPI1(6)
0.016 1.000 4.09e-3 5.16e-3 ✓ sig. —
Carpal tunnel syndrome TTLL5-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
TTLL5(2)
0.016 1.000 4.09e-3 5.16e-3 ✓ sig. —
Mouth neoplasms Vertical talus
1 gene
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1 of 1 corroborated by 2+ sources
HOXD10(2)
0.016 1.000 4.09e-3 5.16e-3 ✓ sig. —
Carpal tunnel syndrome Woolly hair-palmoplantar keratoderma syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KANK2(4)
0.016 1.000 4.09e-3 5.16e-3 ✓ sig. —
Carpal tunnel syndrome Schmid metaphyseal chondrodysplasia
1 gene
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1 of 1 corroborated by 2+ sources
COL10A1(2)
0.016 1.000 4.09e-3 5.16e-3 ✓ sig. —
Conotruncal cardiac defect neonatal/infantile epilepsy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KCNH5(2)
0.016 1.000 4.09e-3 5.16e-3 ✓ sig. —
Brugada syndrome Neurodevelopmental disorder with dilated cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
CAMK2D(2)
0.016 1.000 4.09e-3 5.16e-3 ✓ sig. —
Connective tissue neoplasm Machado-joseph disease
1 gene
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THSD7B(1)
0.063 0.125 4.15e-3 5.23e-3 ✓ sig. —
Hyperemesis gravidarum Thyroiditis
1 gene
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PPM1H(1)
0.050 0.250 4.15e-3 5.23e-3 ✓ sig. —
Congenital chloride diarrhea Hydrops fetalis
1 gene
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1 of 1 corroborated by 2+ sources
SLC26A3(3)
0.050 0.250 4.15e-3 5.23e-3 ✓ sig. —
Developmental disorder Hereditary hemophagocytic lymphohistiocytosis
1 gene
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1 of 1 corroborated by 2+ sources
STX11(2)
0.050 0.250 4.15e-3 5.23e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.