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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Thyroid disease Ulnar-mammary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX3(6)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Lymphoma Upper extremity deformity, congenital
1 gene
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1 of 1 corroborated by 2+ sources
EZH2(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Peripheral nervous system disease xeroderma pigmentosum group B
1 gene
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1 of 1 corroborated by 2+ sources
ERCC3(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Congenital anomalies of the kidney and urinary tract Yuksel-vogel-bauer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DLG5(3)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Congenital anomalies of the kidney and urinary tract Middle lobe syndrome
1 gene
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SALL1(1)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Lymphoma Mucosa-associated lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
BCL10(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Autoinflammatory syndrome, familial, behcet-like Lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
TNFAIP3(4)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
autosomal dominant nonsyndromic hearing loss Congenital hearing disorder
1 gene
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1 of 1 corroborated by 2+ sources
PLS1(2)
0.067 0.167 3.50e-3 4.52e-3 ✓ sig. —
complex neurodevelopmental disorder with motor features Kabuki syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KMT2B(2)
0.067 0.167 3.50e-3 4.52e-3 ✓ sig. —
Congenital bile acid synthesis defect Intrahepatic cholestasis
1 gene
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1 of 1 corroborated by 2+ sources
HSD3B7(7)
0.067 0.167 3.50e-3 4.52e-3 ✓ sig. —
Synovial disorder Synovitis
1 gene
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WWP2(1)
0.067 0.167 3.50e-3 4.52e-3 ✓ sig. —
C1 esterase inhibitor deficiency Irritant dermatitis
1 gene
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1 of 1 corroborated by 2+ sources
C2(2)
0.067 0.167 3.50e-3 4.52e-3 ✓ sig. —
Osteomyelitis Parenchymal hematoma
1 gene
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1 of 1 corroborated by 2+ sources
ZBTB46(2)
0.067 0.167 3.50e-3 4.52e-3 ✓ sig. Cluster 1 →
Congenital disorder of deglycosylation Dyslipidemias
1 gene
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1 of 1 corroborated by 2+ sources
NEIL1(2)
0.048 0.333 3.50e-3 4.52e-3 ✓ sig. Cluster 141 →
Dyslipidemias Galactosialidosis
1 gene
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1 of 1 corroborated by 2+ sources
PLTP(2)
0.048 0.333 3.50e-3 4.52e-3 ✓ sig. —
Henoch schoenlein purpura Hepatitis c induced liver cirrhosis
1 gene
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HLA-DRA(1)
0.048 0.333 3.50e-3 4.52e-3 ✓ sig. Cluster 1 →
Developmental regression Early-onset generalized limb-onset dystonia
1 gene
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1 of 1 corroborated by 2+ sources
EIF2AK2(3)
0.048 0.333 3.50e-3 4.52e-3 ✓ sig. —
Intellectual developmental disorder dysmorphic facial syndromic complex neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
SETD5(3)
0.048 0.333 3.50e-3 4.52e-3 ✓ sig. —
Bronchial disease Urethral disease
1 gene
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ZFHX3(1)
0.048 0.333 3.50e-3 4.52e-3 ✓ sig. —
Chorioretinopathy with microcephaly Seckel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PLK4(3)
0.048 0.333 3.50e-3 4.52e-3 ✓ sig. —
Cirrhosis Sick sinus syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KRT8(3)
0.048 0.333 3.50e-3 4.52e-3 ✓ sig. Cluster 4 →
Cleidocranial dysplasia Uremia
1 gene
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1 of 1 corroborated by 2+ sources
RUNX2(6)
0.048 0.333 3.50e-3 4.52e-3 ✓ sig. —
Aneurysm Peeling skin syndrome with leukonychia and acral punctate keratoses
1 gene
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1 of 1 corroborated by 2+ sources
CAST(7)
0.034 0.500 3.50e-3 4.52e-3 ✓ sig. —
Hashimoto disease Periodontal ehlers-danlos syndrome
1 gene
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1 of 1 corroborated by 2+ sources
C1S(3)
0.034 0.500 3.50e-3 4.52e-3 ✓ sig. —
Amish infantile epilepsy syndrome Hashimoto disease
1 gene
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1 of 1 corroborated by 2+ sources
ATXN2(2)
0.034 0.500 3.50e-3 4.52e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.