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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Congenital anomalies of the kidney and urinary tract nephronophthisis 4
1 gene
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1 of 1 corroborated by 2+ sources
NPHP4(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Gastric ulcer neuroblastoma, susceptibility to, 3
1 gene
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1 of 1 corroborated by 2+ sources
ALK(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Lymphoma neutrophil immunodeficiency syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RAC2(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Dimethylglycine dehydrogenase deficiency Gastric ulcer
1 gene
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1 of 1 corroborated by 2+ sources
DMGDH(7)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Distal myotilinopathy Peripheral nervous system disease
1 gene
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1 of 1 corroborated by 2+ sources
MYOT(3)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Dyskinesia, limb and orofacial, infantile-onset Hyperthyroidism
1 gene
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1 of 1 corroborated by 2+ sources
PDE10A(4)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Early-onset progressive neurodegeneration-blindness-ataxia-spasticity syndrome Peripheral nervous system disease
1 gene
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1 of 1 corroborated by 2+ sources
UCHL1(4)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Hyperprolactinemia Hyperthyroidism
1 gene
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1 of 1 corroborated by 2+ sources
PRLR(4)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Congenital anomalies of the kidney and urinary tract congenital anomaly of kidney and urinary tract
1 gene
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1 of 1 corroborated by 2+ sources
CHD1L(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
congenital disorder of glycosylation type II Lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
ATP6AP1(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. Cluster 1 →
immunodeficiency 37 Lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
BCL10(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Hyperthyroidism immunodeficiency 64
1 gene
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1 of 1 corroborated by 2+ sources
RASGRP1(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
immunodeficiency 73b with defective neutrophil chemotaxis and lymphopenia Lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
RAC2(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
immunodeficiency 73c with defective neutrophil chemotaxis and hypogammaglobulinemia Lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
RAC2(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Intellectual developmental disorder dysmorphic skeletal hair Lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
BCL11B(3)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Intellectual developmental disorder speech dysmorphic t-cell Lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
BCL11B(6)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Iodide peroxidase deficiency Thyroid disease
1 gene
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1 of 1 corroborated by 2+ sources
TPO(3)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Deafness-onychodystrophy syndrome Lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Myeloproliferative disorder platelet-type bleeding disorder 17
1 gene
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1 of 1 corroborated by 2+ sources
GFI1B(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Primary angle-closure glaucoma Thyroid disease
1 gene
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1 of 1 corroborated by 2+ sources
SPATA13(4)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. Cluster 39 →
Cerebellar cortical atrophy Peripheral nervous system disease
1 gene
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1 of 1 corroborated by 2+ sources
MYO5A(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Charcot-Marie-Tooth disease axonal type 2CC Peripheral nervous system disease
1 gene
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1 of 1 corroborated by 2+ sources
NEFH(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. Cluster 243 →
Childhood-onset benign chorea with striatal involvement Hyperthyroidism
1 gene
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1 of 1 corroborated by 2+ sources
PDE10A(3)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Chromosome 16p13.3 deletion syndrome Lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
CREBBP(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Myeloproliferative disorder Thrombasthenia-thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
GFI1B(3)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.