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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Brain malformations Toxic nodular goiter
1 gene
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1 of 1 corroborated by 2+ sources
NFIA(6)
0.050 0.333 3.31e-3 4.31e-3 ✓ sig. —
Bronchiectasis MHC class I deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TAP1(2)
0.050 0.333 3.31e-3 4.31e-3 ✓ sig. —
Gaucher disease Intellectual developmental disorder dysmorphic behavioral
1 gene
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MSH6(1)
0.050 0.333 3.31e-3 4.31e-3 ✓ sig. —
Aneurysm Ocular hypertension
2 genes
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2 of 2 corroborated by 2+ sources
CDKN1A(2), MMP1(2)
0.027 0.074 3.31e-3 4.31e-3 ✓ sig. —
Muscular dystrophy myopathy caused by variation in FKTN
1 gene
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1 of 1 corroborated by 2+ sources
FKTN(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 14 →
Muscular dystrophy myopathy, proximal, and ophthalmoplegia
1 gene
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1 of 1 corroborated by 2+ sources
MYH2(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Memory disorders Nasu-hakola disease
1 gene
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1 of 1 corroborated by 2+ sources
TYROBP(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Muscular dystrophy neuromuscular disease caused by qualitative or quantitative defects of alpha-dystroglycan
1 gene
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1 of 1 corroborated by 2+ sources
DAG1(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 14 →
immunodeficiency 106, susceptibility to viral infections Narcolepsy
1 gene
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1 of 1 corroborated by 2+ sources
IFNAR1(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 1 →
immunodeficiency 15a Severe combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
IKBKB(4)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
immunodeficiency 18 Severe combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
CD3E(3)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 10 →
immunodeficiency 19 Severe combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
CD3D(3)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 10 →
immunodeficiency 23 Severe combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
PGM3(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 10 →
immunodeficiency 25 Severe combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
CD247(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
immunodeficiency 92 Memory disorders
1 gene
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1 of 1 corroborated by 2+ sources
REL(3)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
inflammatory bowel disease 25 Narcolepsy
1 gene
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1 of 1 corroborated by 2+ sources
IL10RB(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Intellectual developmental disorder autism speech dysmorphic Memory disorders
1 gene
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1 of 1 corroborated by 2+ sources
CHD1(3)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Intellectual developmental disorder movement cerebellar Muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Muscular dystrophy TOR1AIP1-related myopathy
1 gene
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1 of 1 corroborated by 2+ sources
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Narcolepsy Uric acid urolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
ZNF365(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 1 →
reticular dysgenesis Severe combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
AK2(3)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 10 →
Otosclerosis Retrognathia
1 gene
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1 of 1 corroborated by 2+ sources
PRRX1(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Otosclerosis Rothmund-Thomson syndrome type 1
1 gene
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1 of 1 corroborated by 2+ sources
ANAPC1(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Muscular dystrophy Sarcotubular myopathy
1 gene
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1 of 1 corroborated by 2+ sources
TRIM32(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Severe combined immunodeficiency severe combined immunodeficiency due to CARMIL2 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CARMIL2(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 10 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.