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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Congenital myopathy congenital myopathy with myasthenic-like onset
1 gene
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1 of 1 corroborated by 2+ sources
PAX7(3)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Bronchopulmonary dysplasia Congenital nephrotic syndrome, interstitial lung disease, epidermolysis bullosa syndrome
1 gene
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ITGA3(1)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Bronchopulmonary dysplasia Congenital phimosis
1 gene
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ITGA3(1)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Congenital sialidosis Non-immune hydrops fetalis
1 gene
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1 of 1 corroborated by 2+ sources
NEU1(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Congenital myopathy Cytochrome-b5 reductase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CYB5R3(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Congenital myopathy myopathy, proximal, and ophthalmoplegia
1 gene
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1 of 1 corroborated by 2+ sources
MYH2(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Congenital myopathy Native american myopathy
1 gene
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1 of 1 corroborated by 2+ sources
STAC3(4)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Bronchopulmonary dysplasia neuromuscular disease caused by qualitative or quantitative defects of alpha-dystroglycan
1 gene
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1 of 1 corroborated by 2+ sources
DAG1(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Non-immune hydrops fetalis obsolete PIEZO1-related generalized lymphatic dysplasia with non-immune hydrops fetalis
1 gene
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1 of 1 corroborated by 2+ sources
PIEZO1(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Congenital myopathy Intellectual developmental disorder seizures behavioral
1 gene
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1 of 1 corroborated by 2+ sources
ALG14(3)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Bronchopulmonary dysplasia interstitial lung disease 1
1 gene
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1 of 1 corroborated by 2+ sources
SFTPA1(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
leukemia, acute myeloid, susceptibility to Thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
FLT3(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
lymphatic malformation 1 Non-immune hydrops fetalis
1 gene
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1 of 1 corroborated by 2+ sources
FLT4(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Congenital myopathy MEGF10-related myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MEGF10(3)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
MERTK-related retinopathy Thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
MERTK(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. Cluster 55 →
mucopolysaccharidosis type 7 Non-immune hydrops fetalis
1 gene
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1 of 1 corroborated by 2+ sources
GUSB(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Congenital myopathy muscular dystrophy-dystroglycanopathy
1 gene
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1 of 1 corroborated by 2+ sources
LARGE1(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Body skin hyperlaxity Pulmonary arterial hypertension
1 gene
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1 of 1 corroborated by 2+ sources
GGCX(6)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Borjeson-forssman-lehmann syndrome Pulmonary arterial hypertension
1 gene
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1 of 1 corroborated by 2+ sources
PHF6(7)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Brachydactyly with hypertension Thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
PDE3A(4)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Cardiac and skeletal myopathy Congenital myopathy
1 gene
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1 of 1 corroborated by 2+ sources
ACTN2(3)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Cathepsin a-related arteriopathy, strokes, and leukoencephalopathy Non-immune hydrops fetalis
1 gene
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1 of 1 corroborated by 2+ sources
CTSA(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Childhood-onset autosomal recessive myopathy with external ophthalmoplegia Congenital myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYH2(4)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
ciliary dyskinesia, primary, 40 Non-immune hydrops fetalis
1 gene
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1 of 1 corroborated by 2+ sources
DNAH9(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Factor x deficiency Thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
F10(3)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.