Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Benign concentric annular macular dystrophy Macular dystrophy
1 gene
Show details
1 of 1 corroborated by 2+ sources
IMPG1(5)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Combined immunodeficiency disease combined immunodeficiency due to CD3gamma deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
CD3G(5)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 10 →
Combined immunodeficiency disease combined immunodeficiency due to DOCK8 deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
DOCK8(5)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Combined immunodeficiency disease combined immunodeficiency due to GINS1 deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
GINS1(5)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 10 →
Combined immunodeficiency disease combined immunodeficiency due to LRBA deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
LRBA(3)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 10 →
Combined immunodeficiency disease combined immunodeficiency due to MALT1 deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
MALT1(4)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Combined immunodeficiency disease combined immunodeficiency due to moesin deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
MSN(5)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 10 →
Combined immunodeficiency disease combined immunodeficiency due to OX40 deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
TNFRSF4(5)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 10 →
Combined immunodeficiency disease combined immunodeficiency due to STIM1 deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
STIM1(4)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Combined immunodeficiency disease combined immunodeficiency due to STK4 deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
STK4(5)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 10 →
Combined immunodeficiency disease combined immunodeficiency due to ZAP70 deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
ZAP70(5)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
complex movement disorder with or without neurodevelopmental features Dystonia
1 gene
Show details
1 of 1 corroborated by 2+ sources
HPCA(4)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 167 →
cone dystrophy 3 Macular dystrophy
1 gene
Show details
1 of 1 corroborated by 2+ sources
GUCA1A(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
cone dystrophy 3 Usher syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
GUCA1A(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
cone-rod dystrophy 2 Macular dystrophy
1 gene
Show details
1 of 1 corroborated by 2+ sources
CRX(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 7 →
cone-rod dystrophy 2 Usher syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
CRX(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Congenital adrenal hyperplasia due to 21-hydroxylase deficiency Ehlers-danlos syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
CYP21A2(4)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Congenital microtia Dystonia
1 gene
Show details
1 of 1 corroborated by 2+ sources
PRKRA(6)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
exostoses, multiple, type 1 Partial epilepsy
1 gene
Show details
1 of 1 corroborated by 2+ sources
EXT1(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Fanconi anemia complementation group A Salivary gland neoplasms
1 gene
Show details
1 of 1 corroborated by 2+ sources
FANCA(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Dystonia Focal dystonia
1 gene
Show details
1 of 1 corroborated by 2+ sources
GNAL(6)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 167 →
renal tubular acidosis, distal, 2, with progressive sensorineural hearing loss Usher syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Macular dystrophy retinitis pigmentosa 65
1 gene
Show details
1 of 1 corroborated by 2+ sources
CDHR1(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 7 →
Macular dystrophy RP2-related retinopathy
1 gene
Show details
1 of 1 corroborated by 2+ sources
RP2(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Combined immunodeficiency disease severe combined immunodeficiency due to CARMIL2 deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
CARMIL2(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 10 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.