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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Arboleda-tham syndrome syndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
KAT6A(3)
0.027 1.000 2.34e-3 3.24e-3 ✓ sig. —
Athabaskan brainstem dysgenesis syndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
HOXA1(5)
0.027 1.000 2.34e-3 3.24e-3 ✓ sig. —
BBS9-related ciliopathy Smooth surface dental caries
1 gene
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1 of 1 corroborated by 2+ sources
BBS9(2)
0.027 1.000 2.34e-3 3.24e-3 ✓ sig. —
Esophageal adenocarcinoma Gastrointestinal disease
2 genes
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CRTC1(1), FOXP1(1)
0.030 0.063 2.39e-3 3.31e-3 ✓ sig. —
Bronchitis Schizoaffective disorder
2 genes
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1 of 2 corroborated by 2+ sources
CSMD1(1), NPY(2)
0.030 0.061 2.39e-3 3.31e-3 ✓ sig. —
Retinal degeneration retinitis pigmentosa 27
1 gene
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1 of 1 corroborated by 2+ sources
NRL(3)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. Cluster 7 →
Cleft lip Salivary gland agenesis
1 gene
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1 of 1 corroborated by 2+ sources
FGF10(3)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
sick sinus syndrome 2, autosomal dominant Toxic epidermal necrolysis
1 gene
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1 of 1 corroborated by 2+ sources
HCN4(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Atypical femoral fracture SMAD6-related disease
1 gene
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1 of 1 corroborated by 2+ sources
SMAD6(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Farber disease Spinal muscular atrophy
1 gene
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1 of 1 corroborated by 2+ sources
ASAH1(5)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
frontotemporal dementia and/or amyotrophic lateral sclerosis 2 Spinal muscular atrophy
1 gene
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1 of 1 corroborated by 2+ sources
CHCHD10(4)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Gestational trophoblastic disease Toxic epidermal necrolysis
1 gene
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1 of 1 corroborated by 2+ sources
POU5F1(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Glycogen storage disease glycogen storage disease due to glycogen branching enzyme deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GBE1(7)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Glycogen storage disease glycogen storage disease due to muscle and heart glycogen synthase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GYS1(7)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. Cluster 148 →
Glycogen storage disease glycogen storage disease I
1 gene
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1 of 1 corroborated by 2+ sources
G6PC1(8)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Glycogen storage disease glycogen storage disease II
1 gene
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1 of 1 corroborated by 2+ sources
GAA(7)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Glycogen storage disease glycogen storage disease III
1 gene
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1 of 1 corroborated by 2+ sources
AGL(7)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. Cluster 148 →
Glycogen storage disease glycogen storage disease IXb
1 gene
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1 of 1 corroborated by 2+ sources
PHKB(7)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Glycogen storage disease glycogen storage disease IXc
1 gene
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1 of 1 corroborated by 2+ sources
PHKG2(8)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Glycogen storage disease glycogen storage disease IXd
1 gene
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1 of 1 corroborated by 2+ sources
PHKA1(6)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Glycogen storage disease glycogen storage disease V
1 gene
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1 of 1 corroborated by 2+ sources
PYGM(7)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. Cluster 148 →
Glycogen storage disease glycogen storage disease VI
1 gene
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1 of 1 corroborated by 2+ sources
PYGL(7)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. Cluster 148 →
Glycogen storage disease glycogen storage disorder due to hepatic glycogen synthase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GYS2(6)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Glycogen storage disease Glycoprotein storage disease
1 gene
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1 of 1 corroborated by 2+ sources
GAA(7)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Autoinflammatory syndrome Papa syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PSTPIP1(3)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.