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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Bile duct cancer Trigeminal neuralgia
1 gene
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1 of 1 corroborated by 2+ sources
MAPK1(3)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Bone remodeling disease Synpolydactyly
1 gene
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1 of 1 corroborated by 2+ sources
CHST11(2)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Bone remodeling disease Hennekam syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CCBE1(6)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Corticobasal syndrome Frontotemporal dementia with or without amyotrophic lateral sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
TBK1(6)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Cystic fibrosis-related diabetes Intestinal obstruction
1 gene
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1 of 1 corroborated by 2+ sources
SLC26A9(3)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. Cluster 172 →
Dent disease Hypophosphatemic rickets
1 gene
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1 of 1 corroborated by 2+ sources
CLCN5(7)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Bilirubin metabolism disease Rotor syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLCO1B1(4)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. Cluster 260 →
Smith-magenis syndrome Specific learning disability
1 gene
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1 of 1 corroborated by 2+ sources
IQSEC2(2)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Hematologic disease Rhabdoid tumor
1 gene
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1 of 1 corroborated by 2+ sources
SMARCB1(2)
0.050 0.500 2.34e-3 3.24e-3 ✓ sig. —
Junctional epidermolysis bullosa Sjogren-larsson syndrome
1 gene
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KRT14(1)
0.050 0.500 2.34e-3 3.24e-3 ✓ sig. —
Birk-barel syndrome syndromic complex neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
TRPM3(2)
0.050 0.500 2.34e-3 3.24e-3 ✓ sig. Cluster 109 →
Cataract-glaucoma syndrome syndromic complex neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
TRPM3(3)
0.050 0.500 2.34e-3 3.24e-3 ✓ sig. Cluster 109 →
Perisylvian polymicrogyria Seckel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CPAP(6)
0.050 0.500 2.34e-3 3.24e-3 ✓ sig. —
Carcinogenesis Primary adrenal insufficiency
1 gene
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1 of 1 corroborated by 2+ sources
CUX1(2)
0.050 0.500 2.34e-3 3.24e-3 ✓ sig. —
Gross motor development delay Hemorrhagic stroke
1 gene
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1 of 1 corroborated by 2+ sources
PDGFA(2)
0.050 0.500 2.34e-3 3.24e-3 ✓ sig. —
Lipodystrophy non-severe combined immunodeficiency due to polymerase delta deficiency
1 gene
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1 of 1 corroborated by 2+ sources
POLD1(3)
0.050 0.500 2.34e-3 3.24e-3 ✓ sig. —
Corneal neovascularization Ovarian hyperstimulation syndrome
1 gene
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0.050 0.500 2.34e-3 3.24e-3 ✓ sig. —
Congenital cataract facial dysmorphism neuropathy syndrome Nuclear cataract
1 gene
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1 of 1 corroborated by 2+ sources
GJA3(3)
0.050 0.500 2.34e-3 3.24e-3 ✓ sig. Cluster 43 →
Central nervous system malformation Lipodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
LMNB2(4)
0.050 0.500 2.34e-3 3.24e-3 ✓ sig. Cluster 71 →
Chromosome 2q32-q33 deletion syndrome Clinodactyly
1 gene
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1 of 1 corroborated by 2+ sources
SATB2(3)
0.050 0.500 2.34e-3 3.24e-3 ✓ sig. —
Fetal erythroblastosis Giant cell arteritis
1 gene
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FCGR2A(1)
0.050 0.500 2.34e-3 3.24e-3 ✓ sig. —
Gm1 gangliosidosis Spondyloepiphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
GLB1(6)
0.050 0.500 2.34e-3 3.24e-3 ✓ sig. —
Congenital nervous system disorder Developmental regression
1 gene
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1 of 1 corroborated by 2+ sources
UNC13A(3)
0.050 0.500 2.34e-3 3.24e-3 ✓ sig. —
Congenital radioulnar synostosis Thoracic aortic aneurysm
1 gene
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1 of 1 corroborated by 2+ sources
SMAD6(2)
0.050 0.500 2.34e-3 3.24e-3 ✓ sig. —
Chorea Continuous spike and wave during slow wave sleep syndrome
1 gene
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FRRS1L(1)
0.050 0.500 2.34e-3 3.24e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.