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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Congenital neutropenia Cyclic neutropenia
1 gene
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1 of 1 corroborated by 2+ sources
ELANE(5)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. —
Dementia in huntington’s disease Prion disease
1 gene
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1 of 1 corroborated by 2+ sources
PRNP(3)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. Cluster 154 →
Brachydactyly-elbow wrist dysplasia syndrome Micrognathism
1 gene
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1 of 1 corroborated by 2+ sources
PITX1(2)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. —
Bradyopsia Substance-induced psychosis
1 gene
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1 of 1 corroborated by 2+ sources
RGS9(4)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. Cluster 13 →
Micrognathism non-severe combined immunodeficiency due to polymerase delta deficiency
1 gene
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1 of 1 corroborated by 2+ sources
POLD1(2)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. —
Male reproductive organ cancer Paramyotonia congenita
1 gene
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1 of 1 corroborated by 2+ sources
SCN4A(5)
0.053 0.500 2.21e-3 3.11e-3 ✓ sig. Cluster 163 →
Malan syndrome Strabismus
1 gene
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1 of 1 corroborated by 2+ sources
NFIX(6)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
marshall-smith syndrome Strabismus
1 gene
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1 of 1 corroborated by 2+ sources
NFIX(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Lymphocytic b-cell leukemia TFRC-related combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
TFRC(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Strabismus Troyer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPART(4)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Growth hormone deficiency Waardenburg syndrome type 4C
1 gene
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1 of 1 corroborated by 2+ sources
SOX10(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Genetic steroid-resistant nephrotic syndrome Woolly hair-palmoplantar keratoderma syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KANK2(3)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. Cluster 30 →
Hereditary steroid-resistant nephrotic syndrome Woolly hair-palmoplantar keratoderma syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KANK2(3)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. Cluster 30 →
Growth hormone deficiency X-linked agammaglobulinemia
1 gene
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1 of 1 corroborated by 2+ sources
BTK(3)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Pituitary short stature X-linked agammaglobulinemia
1 gene
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1 of 1 corroborated by 2+ sources
BTK(3)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Growth hormone deficiency X-linked hypogammaglobulinemia
1 gene
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BTK(1)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Pituitary short stature X-linked hypogammaglobulinemia
1 gene
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BTK(1)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Growth hormone deficiency Yemenite deaf-blind hypopigmentation syndrome
1 gene
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SOX10(1)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Congenital cranial dysinnervation disorder Schizoaffective disorder
1 gene
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1 of 1 corroborated by 2+ sources
NEUROG1(3)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. Cluster 265 →
Autoinflammation, antibody deficiency, and immune dysregulation Lymphocytic b-cell leukemia
1 gene
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1 of 1 corroborated by 2+ sources
PLCG2(5)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Avellino corneal dystrophy Sepsis
1 gene
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1 of 1 corroborated by 2+ sources
TGFBI(3)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
bamforth-lazarus syndrome Thyroid cancer
1 gene
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1 of 1 corroborated by 2+ sources
FOXE1(3)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
bardet-biedl syndrome 16 Schizoaffective disorder
1 gene
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1 of 1 corroborated by 2+ sources
SDCCAG8(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Genetic steroid-resistant nephrotic syndrome idiopathic multidrug-resistant nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DAAM2(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Hereditary steroid-resistant nephrotic syndrome idiopathic multidrug-resistant nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DAAM2(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.