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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Transitional cell carcinoma Xq25 microduplication syndrome
1 gene
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1 of 1 corroborated by 2+ sources
STAG2(4)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Bronchitis Young syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CFAP221(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Cervical dystonia Sarcoma
1 gene
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CIZ1(1)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Chondromyxoid fibroma Temporal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
GRM1(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Chromosome 16p13.3 deletion syndrome Transitional cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
CREBBP(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Chromosome 5q deletion syndrome Hypoxia
1 gene
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1 of 1 corroborated by 2+ sources
RPS14(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 21 →
Chromosome xq25 duplication syndrome Transitional cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
STAG2(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Bronchitis Expressive language delay
1 gene
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1 of 1 corroborated by 2+ sources
KLF7(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Familial telangiectasia cancer syndrome Sarcoma
1 gene
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1 of 1 corroborated by 2+ sources
ATR(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Fanconi anemia complementation group C Peripheral vascular disease
1 gene
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1 of 1 corroborated by 2+ sources
FANCC(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
GNPTG-mucolipidosis Rod-cone dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
GNPTG(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Hemolytic uremic syndrome hemolytic uremic syndrome, atypical, 8, with rhizomelic short stature
1 gene
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1 of 1 corroborated by 2+ sources
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 359 →
hereditary fructose intolerance Hypoxia
1 gene
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1 of 1 corroborated by 2+ sources
ALDOB(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 21 →
Hyperthermia Transitional cell carcinoma
1 gene
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GPX1(1)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Adenosine kinase deficiency Hypoxia
1 gene
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1 of 1 corroborated by 2+ sources
ADK(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
AFG3L2-related optic atrophy and/or spastic ataxia spectrum Hyperkinesia
1 gene
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1 of 1 corroborated by 2+ sources
AFG3L2(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Anus neoplasms Transitional cell carcinoma
1 gene
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IFNB1(1)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 5 →
Cortical dysplasia-focal epilepsy syndrome Hyperkinesia
1 gene
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1 of 1 corroborated by 2+ sources
CNTNAP2(4)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Delpire-mcneill syndrome Temporal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
SLC12A2(4)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
retinitis pigmentosa 47 Uveitis
1 gene
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1 of 1 corroborated by 2+ sources
SAG(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Osteochondrodysplasias Rhizomelic dysplasia, ain-naz type
1 gene
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1 of 1 corroborated by 2+ sources
GNPNAT1(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 345 →
Hypoxia Sarcosinemia
1 gene
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1 of 1 corroborated by 2+ sources
SARDH(6)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 21 →
Hemolytic uremic syndrome schimke immuno-osseous dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Osteochondrodysplasias Schmid metaphyseal chondrodysplasia
1 gene
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1 of 1 corroborated by 2+ sources
COL10A1(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Chloracne Sebocystomatosis
1 gene
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1 of 1 corroborated by 2+ sources
KRT17(4)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.