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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Paraplegia Proximal spinal muscular atrophy
1 gene
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1 of 1 corroborated by 2+ sources
SPG7(2)
0.091 0.200 1.95e-3 2.83e-3 ✓ sig. Cluster 333 →
Ataxia with oculomotor apraxia Proximal spinal muscular atrophy
1 gene
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SETX(1)
0.091 0.200 1.95e-3 2.83e-3 ✓ sig. —
Bile duct disorder Congenital heart malformation
1 gene
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MAML3(1)
0.091 0.200 1.95e-3 2.83e-3 ✓ sig. —
Bronchopneumonia Erythropoietic protoporphyria
1 gene
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1 of 1 corroborated by 2+ sources
BTC(3)
0.091 0.200 1.95e-3 2.83e-3 ✓ sig. Cluster 158 →
Focal onset epileptic seizure Frontal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CHRNB2(2)
0.091 0.200 1.95e-3 2.83e-3 ✓ sig. Cluster 273 →
Estrogen resistance Leiomyoma
1 gene
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1 of 1 corroborated by 2+ sources
ESR1(6)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Berylliosis Hepatitis c induced liver cirrhosis
1 gene
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1 of 1 corroborated by 2+ sources
BTNL2(2)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Hyperalphalipoproteinemia Hypertensive heart disease
1 gene
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1 of 1 corroborated by 2+ sources
SCARB1(2)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Apraxia Marinesco-sjogren syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SIL1(6)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. Cluster 380 →
Metaphyseal dysplasia Tooth abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
RUNX2(6)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Gilbert syndrome Rotor syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLCO1B1(4)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. Cluster 260 →
Bone resorption Ovarian diseases
1 gene
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1 of 1 corroborated by 2+ sources
CYP19A1(2)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Cornelia de lange syndrome Trichorhinophalangeal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RAD21(6)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Omenn syndrome X-linked combined immunodeficiency diseases
1 gene
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1 of 1 corroborated by 2+ sources
IL2RG(4)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Contracture Geleophysic dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. Cluster 52 →
Desbuquois dysplasia Epiphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
CANT1(5)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Apraxia Dias-logan syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BCL11A(5)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Early onset vitamin b6 dependent epilepsy Myelomonocytic leukemia
1 gene
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1 of 1 corroborated by 2+ sources
CBL(5)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Delirium Parkinsonism-dystonia
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A3(4)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Congenital dyserythropoietic anemia Orthostatic hypotension
1 gene
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1 of 1 corroborated by 2+ sources
ABCB1(2)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. Cluster 57 →
Cholesterol ester transfer protein deficiency Hypertensive heart disease
1 gene
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1 of 1 corroborated by 2+ sources
SCARB1(2)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Chorioretinopathy with microcephaly Dwarfism
1 gene
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1 of 1 corroborated by 2+ sources
PLK4(3)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Chudley-mccullough syndrome Spherocytosis
1 gene
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1 of 1 corroborated by 2+ sources
SPTB(3)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Cleidocranial dysplasia Tooth abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
RUNX2(6)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Chronic progressive external ophthalmoplegia Mitochondrial myopathy
1 gene
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1 of 1 corroborated by 2+ sources
RRM2B(2)
0.059 0.500 1.95e-3 2.83e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.