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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Parkinson-dementia syndrome Progressive supranuclear palsy
1 gene
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1 of 1 corroborated by 2+ sources
MAPT(7)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
primary ciliary dyskinesia 5 Teratozoospermia
1 gene
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1 of 1 corroborated by 2+ sources
HYDIN(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Middle ear cholesteatoma Progressive supranuclear palsy
1 gene
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1 of 1 corroborated by 2+ sources
IL2(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Progressive supranuclear palsy Wolcott-rallison syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EIF2AK3(5)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. Cluster 338 →
Bladder exstrophy and epispadias complex RAB23-related Carpenter syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RAB23(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
congenital myopathy with myasthenic-like onset Rhabdomyosarcoma
1 gene
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1 of 1 corroborated by 2+ sources
PAX7(3)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Aneurysm neonatal/infantile epilepsy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KCNH5(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. Cluster 12 →
Aneurysm nephrotic syndrome, type 3
1 gene
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1 of 1 corroborated by 2+ sources
PLCE1(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
nijmegen breakage syndrome Rhabdomyosarcoma
1 gene
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1 of 1 corroborated by 2+ sources
NBN(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Methylmalonic acidemia methylmalonic acidemia due to methylmalonyl-CoA epimerase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MCEE(5)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. Cluster 246 →
Methylmalonic acidemia methylmalonic acidemia due to transcobalamin receptor defect
1 gene
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1 of 1 corroborated by 2+ sources
CD320(7)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Methylmalonic acidemia methylmalonic acidemia with homocystinuria, type cblJ
1 gene
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1 of 1 corroborated by 2+ sources
ABCD4(7)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. Cluster 246 →
Methylmalonic acidemia methylmalonic aciduria and homocystinuria type cblF
1 gene
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1 of 1 corroborated by 2+ sources
LMBRD1(7)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Methylmalonic acidemia methylmalonic aciduria, cblA type
1 gene
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1 of 1 corroborated by 2+ sources
MMAA(7)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Methylmalonic acidemia methylmalonic aciduria, cblb type
1 gene
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1 of 1 corroborated by 2+ sources
MMAB(7)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Cortical development malformation microcephaly 2, primary, autosomal recessive, with or without cortical malformations
1 gene
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1 of 1 corroborated by 2+ sources
WDR62(3)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
microphthalmia, syndromic 2 Rhabdomyosarcoma
1 gene
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1 of 1 corroborated by 2+ sources
BCOR(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
mosaic variegated aneuploidy syndrome 1 Rhabdomyosarcoma
1 gene
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1 of 1 corroborated by 2+ sources
BUB1B(3)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Multiple epiphyseal dysplasia with early-onset diabetes mellitus Progressive supranuclear palsy
1 gene
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1 of 1 corroborated by 2+ sources
EIF2AK3(3)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. Cluster 338 →
Aneurysm multisystemic smooth muscle dysfunction syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ACTA2(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Bladder exstrophy and epispadias complex gapo syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ANTXR1(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
glycogen storage disease I Hypoglycemia
1 gene
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1 of 1 corroborated by 2+ sources
G6PC1(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. Cluster 36 →
Cortical development malformation goldberg-shprintzen syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KIFBP(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. Cluster 176 →
Aneurysm Growth restriction, hypoplastic kidneys, alopecia, and distinctive facies
1 gene
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1 of 1 corroborated by 2+ sources
ZPR1(4)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Bladder exstrophy and epispadias complex Growth retardation, alopecia, pseudoanodontia and optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
ANTXR1(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.