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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Byzanthine arch palate Perisylvian polymicrogyria
1 gene
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NSDHL(1)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. Cluster 381 →
Post-operative myocardial infarction Rheumatic disease
1 gene
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FHIT(1)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. —
Apolipoprotein a-i deficiency Posterior cortical atrophy
1 gene
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1 of 1 corroborated by 2+ sources
ABCA1(3)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. —
Parietal foramina Posterior cortical atrophy
1 gene
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1 of 1 corroborated by 2+ sources
MSX2(7)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. Cluster 93 →
Omphalocele exstrophy imperforate anus Potocki-lupski syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FLCN(3)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. —
Platelet disorder qualitative platelet defect
1 gene
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1 of 1 corroborated by 2+ sources
TBXA2R(3)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. Cluster 33 →
Essential thrombocythemia Hemorrhagic stroke
1 gene
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1 of 1 corroborated by 2+ sources
PDGFA(3)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. —
Hereditary folate malabsorption Hyperhomocysteinemia
1 gene
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1 of 1 corroborated by 2+ sources
SLC46A1(4)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. —
Basal ganglia disease Hyperferritinemia
1 gene
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1 of 1 corroborated by 2+ sources
FTL(3)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. —
Hyperhomocysteinemia Large cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
PYCARD(2)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. —
Cortisone reductase deficiency Omphalocele exstrophy imperforate anus
1 gene
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1 of 1 corroborated by 2+ sources
HSD11B1(5)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. —
Constitutional mismatch repair deficiency Cystic leukoencephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
RNASET2(4)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. Cluster 166 →
Discoid lupus erythematosus Motor skills disorder
1 gene
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1 of 1 corroborated by 2+ sources
OGG1(2)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. —
Discoid lupus erythematosus Senile cataract
1 gene
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OGG1(1)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. —
Dna repair-deficiency disorders Senile cataract
1 gene
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1 of 1 corroborated by 2+ sources
WRN(2)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. —
Dysautonomia Pruritus
1 gene
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1 of 1 corroborated by 2+ sources
TPSAB1(2)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. —
Eosinophilic leukemia Thyroid gland neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
PDGFRA(2)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. —
Agammaglobulinemia Combined immunodeficiency with facio-oculo-skeletal anomalies
1 gene
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1 of 1 corroborated by 2+ sources
PIK3CD(2)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. Cluster 181 →
Congenital leukocyte adherence deficiency Platelet disorder
1 gene
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1 of 1 corroborated by 2+ sources
FERMT3(2)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. —
Follicular cyst Malunion fracture
1 gene
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1 of 1 corroborated by 2+ sources
SCARB1(3)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. —
Giant cell glioblastoma Mountain sickness
1 gene
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1 of 1 corroborated by 2+ sources
TACC1(2)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. —
17p11.2 microduplication syndrome Omphalocele exstrophy imperforate anus
1 gene
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1 of 1 corroborated by 2+ sources
FLCN(2)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. —
1p36 deletion syndrome Dyssegmental dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
HSPG2(4)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. Cluster 350 →
Adrenoleukodystrophy Congestive ophthalmopathy
1 gene
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1 of 1 corroborated by 2+ sources
SCD(2)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. —
Anaptoglobinemia Optic neuritis
1 gene
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1 of 1 corroborated by 2+ sources
ATP7B(2)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.