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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Chagas cardiomyopathy Cousin syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX15(3)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Chagas cardiomyopathy Pelviscapular dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
TBX15(5)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Chagas cardiomyopathy Neonatal anemia
1 gene
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1 of 1 corroborated by 2+ sources
SPTB(3)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. Cluster 400 →
Chagas cardiomyopathy Perinatal hemolytic anemia
1 gene
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1 of 1 corroborated by 2+ sources
SPTB(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. Cluster 400 →
Amblyopia Christianson syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC9A6(5)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. Cluster 281 →
Chromosome 5q12 deletion syndrome Gallbladder neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
PDE4D(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Ck syndrome Polymicrogyria
1 gene
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1 of 1 corroborated by 2+ sources
NSDHL(7)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Amblyopia CNGB1-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
CNGB1(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. Cluster 281 →
Gallbladder neoplasms Peters plus syndrome
1 gene
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1 of 1 corroborated by 2+ sources
B3GLCT(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. Cluster 143 →
Night blindness, congenital stationary RDH5-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RDH5(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Bilateral parasagittal parieto-occipital polymicrogyria Polymicrogyria
1 gene
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1 of 1 corroborated by 2+ sources
FIG4(6)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Bothnia retinal dystrophy Night blindness, congenital stationary
1 gene
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1 of 1 corroborated by 2+ sources
RLBP1(6)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Boudin-mortier syndrome Chagas cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
NPR3(4)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
HAND2 related congenital heart defect Ventricular remodeling
1 gene
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1 of 1 corroborated by 2+ sources
HAND2(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Hoxha-aliu syndrome Spondyloepimetaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
ERI1(3)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. Cluster 211 →
Deafness with cataract, intellectual disability, and polyneuropathy Polymicrogyria
1 gene
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1 of 1 corroborated by 2+ sources
PSMC3(4)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Disorder of sex development Gallbladder neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
RXFP2(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. Cluster 143 →
Dominant hereditary optic atrophy Ventricular remodeling
1 gene
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1 of 1 corroborated by 2+ sources
OPA1(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Amblyopia Dysbiosis
1 gene
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1 of 1 corroborated by 2+ sources
TLR4(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Early-onset progressive neurodegeneration-blindness-ataxia-spasticity syndrome Gallbladder neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
UCHL1(4)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. Cluster 143 →
Ehlers-Danlos syndrome, spondylocheirodysplastic type Spondyloepimetaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Amelogenesis imperfecta Enamel-renal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FAM20A(6)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. Cluster 366 →
Chagas cardiomyopathy Intracranial germ cell tumor
1 gene
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BAK1(1)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Amblyopia krabbe disease
1 gene
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1 of 1 corroborated by 2+ sources
GALC(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
LAMA2-related muscular dystrophy Polymicrogyria
1 gene
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1 of 1 corroborated by 2+ sources
LAMA2(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.