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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
1p31p32 microdeletion syndrome Uterine polyp
1 gene
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1 of 1 corroborated by 2+ sources
NFIA(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
2q37 microdeletion syndrome Mixed connective tissue disease
1 gene
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1 of 1 corroborated by 2+ sources
HDAC4(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Abruzzo-erickson syndrome Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
TBX22(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 282 →
Acys amyloidosis Meningioma
1 gene
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1 of 1 corroborated by 2+ sources
CST3(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Adult polyglucosan body disease Polyneuropathy
1 gene
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1 of 1 corroborated by 2+ sources
GBE1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
amyotrophic lateral sclerosis, susceptibility to, 24 Short rib dysplasia-polydactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NEK1(4)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 22 →
Myoclonus-renal failure syndrome Progressive myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
SCARB2(6)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 329 →
Conduction disorder of the heart Naxos disease
1 gene
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1 of 1 corroborated by 2+ sources
JUP(6)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
nephronophthisis 12 Short rib dysplasia-polydactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TTC21B(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 22 →
Myoclonic epilepsy neurodegeneration, childhood-onset, with cerebellar ataxia and cognitive decline
1 gene
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1 of 1 corroborated by 2+ sources
CAPRIN1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Myoclonic epilepsy neurodevelopmental disorder with language impairment, autism, and attention deficit-hyperactivity disorder
1 gene
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1 of 1 corroborated by 2+ sources
CAPRIN1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Mixed connective tissue disease neurodevelopmental disorder with microcephaly and dysmorphic facies
1 gene
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1 of 1 corroborated by 2+ sources
SPOP(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Mixed connective tissue disease neurodevelopmental disorder with relative macrocephaly and with or without cardiac or endocrine anomalies
1 gene
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1 of 1 corroborated by 2+ sources
SPOP(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Meningioma NTHL1-deficiency tumor predisposition syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NTHL1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Hyperaldosteronism Oropharyngeal dysphagia
1 gene
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1 of 1 corroborated by 2+ sources
ATP2B3(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Congenital cataract microcephaly intellectual disability syndrome Polyneuropathy
1 gene
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1 of 1 corroborated by 2+ sources
MED25(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 239 →
Blood coagulation disorder Congenital factor x deficiency
1 gene
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1 of 1 corroborated by 2+ sources
F10(5)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Congenital factor xii deficiency Transient ischemic attack
1 gene
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1 of 1 corroborated by 2+ sources
F12(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Congenital hypothalamic hamartoma syndrome Meningioma
1 gene
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1 of 1 corroborated by 2+ sources
SMO(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 292 →
Blood coagulation disorder Body skin hyperlaxity
1 gene
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1 of 1 corroborated by 2+ sources
GGCX(5)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Retinopathy-sensory neuropathy syndrome Short rib dysplasia-polydactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FLVCR1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Satb2 associated syndrome Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
SATB2(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Myoclonic epilepsy self-limited familial neonatal epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
KCNQ3(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Short rib dysplasia-polydactyly syndrome short-rib thoracic dysplasia 11 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
DYNC2I2(5)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 22 →
Short rib dysplasia-polydactyly syndrome short-rib thoracic dysplasia 16 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
IFT52(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 22 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.