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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Congenital hyperinsulinism Intestinal disaccharide malabsorption
1 gene
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1 of 1 corroborated by 2+ sources
GCK(3)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Laryngeal neoplasms Male reproductive system disease
1 gene
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WNT7B(1)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Myoclonic dystonia Pituitary neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
DRD2(2)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Bowen’s disease Intestinal polyps
1 gene
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CCND1(1)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Disorders of sex development Male pseudohypopituitarism
1 gene
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1 of 1 corroborated by 2+ sources
AKR1C2(2)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. Cluster 344 →
Ductus arteriosus, patent Intestinal pseudo-obstruction
1 gene
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1 of 1 corroborated by 2+ sources
TFAP2B(2)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Cerebroretinal microangiopathy with calcifications and cysts Tumor predisposition syndrome
1 gene
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1 of 1 corroborated by 2+ sources
POT1(6)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Anterior polar cataract Embryonal nuclear cataract
1 gene
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1 of 1 corroborated by 2+ sources
CRYBB3(3)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Ovarian mucinous adenocarcinoma Testotoxicosis
1 gene
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1 of 1 corroborated by 2+ sources
INHBB(3)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Disorders of sex development Testotoxicosis
1 gene
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1 of 1 corroborated by 2+ sources
LHCGR(2)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Cleft lip and cleft of alveolar process of maxilla Van der woude syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IRF6(7)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Gastrointestinal hemorrhage Waldenstrom macroglobulinemia
1 gene
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1 of 1 corroborated by 2+ sources
IRF4(2)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Adenomatous polyposis Xanthinuria
1 gene
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TSC2(1)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Tuberous sclerosis complex Xanthinuria
1 gene
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1 of 1 corroborated by 2+ sources
TSC2(7)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. Cluster 70 →
Metaphyseal chondrodysplasia Trichorhinophalangeal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TRPS1(7)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Corticobasal syndrome Frontotemporal dementia with motor neuron disease
1 gene
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1 of 1 corroborated by 2+ sources
TBK1(2)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Bulbar palsy Episodic ataxia
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1A(5)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 61 →
Cryptogenic west syndrome Fatty acid metabolism disorder
1 gene
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HSD17B4(1)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Accessory skin tag Arterial tortuosity syndrome
1 gene
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EFEMP2(1)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Arterial tortuosity syndrome Ruptured abdominal aortic aneurysm
1 gene
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EFEMP2(1)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 66 →
Arterial tortuosity syndrome Ruptured aortic aneurysm
1 gene
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EFEMP2(1)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 66 →
Beta-hydroxyisobutyryl-coa deacylase deficiency Charcot-marie-tooth disease, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
AIFM1(5)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Coronal craniosynostosis Robinow syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TWIST1(4)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 127 →
Spermatogenic failure, x-linked Synovial sarcoma
1 gene
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1 of 1 corroborated by 2+ sources
SSX1(5)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Charcot-marie-tooth disease, x-linked Spinocerebellar ataxia, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
GJB1(7)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.