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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Dysferlinopathy Synovitis, acne, pustulosis, hyperostosis, and osteitis
1 gene
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1 of 1 corroborated by 2+ sources
DYSF(3)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Dysarthria Dyskinesia with orofacial involvement
1 gene
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1 of 1 corroborated by 2+ sources
ADCY5(5)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Dysarthria Dyskinesia, familial, with facial myokymia
1 gene
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1 of 1 corroborated by 2+ sources
ADCY5(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
ectodermal dysplasia and immunodeficiency 2 Nasopharyngeal carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
NFKBIA(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Patterson stevenson fontaine syndrome Syndactyly
1 gene
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1 of 1 corroborated by 2+ sources
LMBR1(4)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Centronuclear myopathy Periodic paralysis with transient compartment-like syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1S(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
periventricular nodular heterotopia 7 Syndactyly
1 gene
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1 of 1 corroborated by 2+ sources
NEDD4L(3)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Keratitis peutz-jeghers syndrome
1 gene
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1 of 1 corroborated by 2+ sources
STK11(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Gastritis platelet abnormalities with eosinophilia and immune-mediated inflammatory disease
1 gene
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1 of 1 corroborated by 2+ sources
ARPC1B(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 1 →
poirier-bienvenu neurodevelopmental syndrome Syndactyly
1 gene
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1 of 1 corroborated by 2+ sources
CSNK2B(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Maturity-onset diabetes of the young (mody) Pancreatic beta-cell agenesis with neonatal diabetes mellitus
1 gene
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PTF1A(1)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. —
polycystic kidney disease 3 with or without polycystic liver disease Polycystic liver disease
1 gene
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1 of 1 corroborated by 2+ sources
GANAB(2)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. Cluster 23 →
Polycystic liver disease polycystic liver disease 1
1 gene
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1 of 1 corroborated by 2+ sources
PRKCSH(6)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. Cluster 23 →
Polycystic liver disease polycystic liver disease 2
1 gene
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1 of 1 corroborated by 2+ sources
SEC63(6)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. Cluster 23 →
Congenital impairment of spermatozoa motility primary ciliary dyskinesia 21
1 gene
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1 of 1 corroborated by 2+ sources
DRC1(2)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. —
pycnodysostosis Skeletal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
CTSK(2)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. —
Combined immunodeficiency-lymphopenia-cancer predisposing syndrome due to aiolos deficiency Nasal disorder
1 gene
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1 of 1 corroborated by 2+ sources
IKZF3(2)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. —
Anterior segment dysgenesis Congenital cataract anterior segment dysgenesis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PITX3(5)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. —
Anterior segment dysgenesis Congenital cornea plana
1 gene
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1 of 1 corroborated by 2+ sources
KERA(2)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. —
Anterior segment dysgenesis Congenital malformation of cornea
1 gene
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KERA(1)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. —
EYS-related retinopathy Systemic mastocytosis
1 gene
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1 of 1 corroborated by 2+ sources
EYS(2)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. —
Bullous pemphigoid FLNB-associated autosomal dominant filamin related bone disorder
1 gene
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1 of 1 corroborated by 2+ sources
FLNB(2)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. —
Congenital clubfoot FLNB-associated autosomal dominant filamin related bone disorder
1 gene
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1 of 1 corroborated by 2+ sources
FLNB(2)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. —
Anti-neutrophil antibody associated vasculitis fragile x syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FMR1(2)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. —
Anterior segment dysgenesis Cornea plana
1 gene
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1 of 1 corroborated by 2+ sources
KERA(5)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.