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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Glycoprotein vi deficiency Platelet-type bleeding disorder
1 gene
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1 of 1 corroborated by 2+ sources
GP6(7)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
gnathodiaphyseal dysplasia Visual disorder
1 gene
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1 of 1 corroborated by 2+ sources
ANO5(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Arhinia-choanal atresia-microphthalmia syndrome Cryptorchidism
1 gene
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1 of 1 corroborated by 2+ sources
SMCHD1(3)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Asymptomatic hyperckemia-myalgia-rhabdomyolysis syndrome Visual disorder
1 gene
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1 of 1 corroborated by 2+ sources
ANO5(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Atypical fanconi syndrome Intrahepatic cholestasis of pregnancy
1 gene
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1 of 1 corroborated by 2+ sources
HNF4A(3)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
autosomal recessive cutis laxa type 2B Cutis laxa
1 gene
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1 of 1 corroborated by 2+ sources
PYCR1(7)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. Cluster 80 →
autosomal recessive cutis laxa type 2C Cutis laxa
1 gene
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1 of 1 corroborated by 2+ sources
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. Cluster 80 →
Hoarding disorder lamb-shaffer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOX5(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Common atrium Congenital diaphragmatic hernia
1 gene
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CDK8(1)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Congenital cerebral hernia Dandy-walker syndrome
1 gene
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PIBF1(1)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. Cluster 8 →
CBL-related disorder Cryptorchidism
1 gene
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1 of 1 corroborated by 2+ sources
CBL(3)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Childhood apraxia of speech Hoarding disorder
1 gene
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1 of 1 corroborated by 2+ sources
FOXP2(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Chromosome 15q24 deletion syndrome Congenital diaphragmatic hernia
1 gene
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1 of 1 corroborated by 2+ sources
SIN3A(3)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. Cluster 343 →
Chylothorax Situs inversus
1 gene
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PKD1L1(1)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. Cluster 46 →
ciliary dyskinesia, primary, 40 Situs inversus
1 gene
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1 of 1 corroborated by 2+ sources
DNAH9(3)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. Cluster 46 →
ciliary dyskinesia, primary, 44 Hoarding disorder
1 gene
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1 of 1 corroborated by 2+ sources
NEK10(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. Cluster 278 →
Codas syndrome Congenital diaphragmatic hernia
1 gene
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1 of 1 corroborated by 2+ sources
LONP1(6)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Congenital plasminogen activator inhibitor deficiency type 1 Retinopathy of prematurity
1 gene
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1 of 1 corroborated by 2+ sources
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Catecholaminergic polymorphic ventricular tachycardia Congenital-onset steinert myotonic dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
DMPK(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Antiphospholipid syndrome Corpus callosum agenesis with facial anomalies and cerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
FRMD4A(3)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Congenital diaphragmatic hernia Craniofacial deafness hand syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PAX3(6)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
craniosynostosis 6 Dandy-walker syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ZIC1(3)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Congenital diaphragmatic hernia Cryptophthalmia
1 gene
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1 of 1 corroborated by 2+ sources
FREM2(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Cryptophthalmia Fraser syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FREM2(6)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
16q24.3 microdeletion syndrome Cryptorchidism
1 gene
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1 of 1 corroborated by 2+ sources
ANKRD11(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.