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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Hyperparathyroidism Parathyroid carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
CDC73(8)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Hyperparathyroidism Parathyroid neoplasm
1 gene
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1 of 1 corroborated by 2+ sources
CDC73(8)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
B-lymphoblastic leukemia/lymphoma PAX5-related B lymphopenia and autism spectrum disorder
1 gene
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1 of 1 corroborated by 2+ sources
PAX5(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Myosin storage myopathy Pericarditis
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Biventricular noncompaction cardiomyopathy Pericarditis
1 gene
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MYH7(1)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Carotid intima-media thickness Periodontal disease
1 gene
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1 of 1 corroborated by 2+ sources
PPARG(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Angiofollicular ganglionic hyperplasia Periodontal disease
1 gene
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IL6(1)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Angiolymphoid hyperplasia Periodontal disease
1 gene
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IL6(1)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Castleman disease Periodontal disease
1 gene
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1 of 1 corroborated by 2+ sources
IL6(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Cerebral cortical atrophy Paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
SPG7(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. Cluster 333 →
Beta-mannosidosis Post-operative atrial fibrillation
1 gene
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1 of 1 corroborated by 2+ sources
ADGRV1(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Post-operative atrial fibrillation Testotoxicosis
1 gene
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1 of 1 corroborated by 2+ sources
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Male breast carcinoma Male breast neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
RAD51B(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Hypochromic microcytic anemia Microcytic anemia
1 gene
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1 of 1 corroborated by 2+ sources
SLC11A2(7)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. Cluster 227 →
Gastrointestinal neoplasms Miller-dieker syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HIC1(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
muscular dystrophy, limb-girdle, autosomal dominant Paresthesia
1 gene
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1 of 1 corroborated by 2+ sources
CAPN3(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Chilblain lupus erythematosus Interferonopathy
1 gene
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1 of 1 corroborated by 2+ sources
SAMHD1(6)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. Cluster 150 →
complex neurodevelopmental disorder with or without congenital anomalies Congenital ptosis
1 gene
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1 of 1 corroborated by 2+ sources
MYH10(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Congenital chloride diarrhea Congenital diarrhea
1 gene
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1 of 1 corroborated by 2+ sources
GRWD1(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. Cluster 172 →
Anti-nmda receptor encephalitis Littles disease
1 gene
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1 of 1 corroborated by 2+ sources
IFIH1(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Aprosencephaly Coach syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Disruptive impulse-control and conduct disorder Myoclonic dystonia
1 gene
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1 of 1 corroborated by 2+ sources
DRD2(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. Cluster 325 →
Myoclonic encephalopathy Tubulinopathy
1 gene
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1 of 1 corroborated by 2+ sources
TUBA1A(3)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Neural tube defects, susceptibility to Sacral agenesis
1 gene
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1 of 1 corroborated by 2+ sources
TBXT(5)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Choanal atresia syndrome Craniofacial ulnar renal syndrome
1 gene
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CHD7(1)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.