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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Hemoglobinopathy toms river Secondary malignant neoplasm
1 gene
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1 of 1 corroborated by 2+ sources
HBG2(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Hepatic lipase deficiency Pericarditis
1 gene
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1 of 1 corroborated by 2+ sources
LIPC(4)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Blepharoptosis hereditary peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
IGHMBP2(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Hereditary sensory and autonomic neuropathy hereditary sensory and autonomic neuropathy type 4
1 gene
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1 of 1 corroborated by 2+ sources
NTRK1(4)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 169 →
Hereditary sensory and autonomic neuropathy hereditary sensory and autonomic neuropathy type 6
1 gene
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1 of 1 corroborated by 2+ sources
DST(7)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Hereditary sensory and autonomic neuropathy Hereditary sensory and autonomic neuropathy with spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
CCT5(5)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 169 →
Burkitt lymphoma hereditary thrombocytopenia and hematologic cancer predisposition syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RUNX1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
high myopia-sensorineural deafness syndrome Marshall syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLITRK6(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
holocarboxylase synthetase deficiency Specific language disorder
1 gene
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1 of 1 corroborated by 2+ sources
HLCS(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 179 →
Hyperparathyroidism hyperparathyroidism 2 with jaw tumors
1 gene
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1 of 1 corroborated by 2+ sources
CDC73(8)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
B-lymphoblastic leukemia/lymphoma hypoparathyroidism-deafness-renal disease syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATA3(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Marshall syndrome Wagner syndrome
1 gene
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1 of 1 corroborated by 2+ sources
VCAN(6)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 248 →
Neuropathy Wilson disease
1 gene
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1 of 1 corroborated by 2+ sources
ATP7B(5)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Childhood apraxia of speech Specific language disorder
1 gene
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1 of 1 corroborated by 2+ sources
FOXP2(3)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
ciliary dyskinesia, primary, 44 Pericarditis
1 gene
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1 of 1 corroborated by 2+ sources
NEK10(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 278 →
Cirrhosis-dystonia-polycythemia-hypermanganesemia syndrome Polycythemia
1 gene
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1 of 1 corroborated by 2+ sources
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 105 →
22q11 deletion syndrome Digeorge syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FGF8(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Digeorge syndrome Intermittent explosive disorder
1 gene
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1 of 1 corroborated by 2+ sources
COMT(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Chromosome 22q11.2 microduplication syndrome Digeorge syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX1(5)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Blepharoptosis Dominant hereditary optic atrophy
1 gene
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OPA1(1)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
B-lymphoblastic leukemia/lymphoma Early-onset combined immunodeficiency with low ig due to dominant-negative ikaros mutation
1 gene
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IKZF1(1)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
EGLN1-related erythrocytosis and pheochromocytoma/paraganglioma predisposition Polycythemia
1 gene
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1 of 1 corroborated by 2+ sources
EGLN1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
B-lymphoblastic leukemia/lymphoma pancytopenia due to IKZF1 mutations
1 gene
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1 of 1 corroborated by 2+ sources
IKZF1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Papillon-lefevre syndrome Periodontal disease
1 gene
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1 of 1 corroborated by 2+ sources
CTSC(6)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Hereditary sensory and autonomic neuropathy Paraparesis
1 gene
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1 of 1 corroborated by 2+ sources
TECPR2(4)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.