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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Gaucher disease pyruvate kinase deficiency of red cells
1 gene
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1 of 1 corroborated by 2+ sources
PKLR(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Male reproductive organ cancer Myotonia
1 gene
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SCN4A(1)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 163 →
Male reproductive organ cancer Potassium-aggravated myotonia
1 gene
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1 of 1 corroborated by 2+ sources
SCN4A(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 163 →
Male reproductive organ cancer SCN4A-related myopathy, autosomal recessive
1 gene
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1 of 1 corroborated by 2+ sources
SCN4A(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 163 →
mandibular hypoplasia-deafness-progeroid syndrome Micrognathism
1 gene
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1 of 1 corroborated by 2+ sources
POLD1(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Cutaneous mastocytosis Mast cell leukemia
1 gene
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1 of 1 corroborated by 2+ sources
KIT(3)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Chondrodysplasia mend syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EBP(6)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Micrognathism Microstomia
1 gene
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LEMD2(1)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Charcot-Marie-Tooth disease type 4 Gaucher disease
1 gene
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1 of 1 corroborated by 2+ sources
PRX(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Chondrodysplasia chondrodysplasia with joint dislocations, gpapp type
1 gene
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1 of 1 corroborated by 2+ sources
BPNT2(7)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 301 →
Chromosome 1p32-p31 deletion syndrome Toxic nodular goiter
1 gene
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1 of 1 corroborated by 2+ sources
NFIA(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
ciliopathy-IFT74 Congenital brain malformation
1 gene
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1 of 1 corroborated by 2+ sources
IFT74(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 110 →
ciliopathy-IFT74 Congenital hypoplasia of part of brain
1 gene
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1 of 1 corroborated by 2+ sources
IFT74(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 110 →
ciliopathy-IFT74 Microgyria
1 gene
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1 of 1 corroborated by 2+ sources
IFT74(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 110 →
coffin-lowry syndrome Coffin-siris syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RPS6KA3(6)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
coffin-lowry syndrome Micrognathism
1 gene
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1 of 1 corroborated by 2+ sources
RPS6KA3(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Coffin-siris syndrome Small cell ovary carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
SMARCA4(5)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 120 →
Cutaneous mastocytosis Testicular seminoma
1 gene
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1 of 1 corroborated by 2+ sources
KIT(3)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Asbestosis Thiamine deficiency
1 gene
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1 of 1 corroborated by 2+ sources
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 245 →
Asbestosis TPM4-related platelet disorder
1 gene
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1 of 1 corroborated by 2+ sources
TPM4(3)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Toxic nodular goiter Type a insulin resistance syndrome
1 gene
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1 of 1 corroborated by 2+ sources
INSR(3)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Cutaneous mastocytosis Urticaria pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
KIT(3)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Gaucher disease Visceral acid sphingomyelinase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SMPD1(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Micrognathism Wormian bones-micrognathia-abnormal dentition-progeroid syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LEMD2(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Chondrodysplasia X-linked dominant chondrodysplasia chassaing-lacombe type
1 gene
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1 of 1 corroborated by 2+ sources
HDAC6(6)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 301 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.