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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Caffey disease Cholangitis
1 gene
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1 of 1 corroborated by 2+ sources
COL1A1(6)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 138 →
Cholangitis Maternal hypertension
1 gene
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1 of 1 corroborated by 2+ sources
COL1A1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 138 →
Cholangitis Rhizomelia
1 gene
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1 of 1 corroborated by 2+ sources
COL1A1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 138 →
Cholestanol storage disease Metabolic bone disorder
1 gene
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1 of 1 corroborated by 2+ sources
CYP27A1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Bicuspid aortic valve Chromosome 6q24-q25 deletion syndrome
1 gene
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TAB2(1)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 188 →
Coasy protein-associated neurodegeneration Neurodegeneration with brain iron accumulation
1 gene
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1 of 1 corroborated by 2+ sources
COASY(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Coenzyme a synthase protein associated neurodegeneration Neurodegeneration with brain iron accumulation
1 gene
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1 of 1 corroborated by 2+ sources
COASY(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Hemochromatosis hemochromatosis type 2A
1 gene
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1 of 1 corroborated by 2+ sources
HJV(6)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 135 →
Hemochromatosis hemochromatosis type 2B
1 gene
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1 of 1 corroborated by 2+ sources
HAMP(6)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 135 →
Hemochromatosis hemochromatosis type 3
1 gene
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1 of 1 corroborated by 2+ sources
TFR2(6)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 135 →
Hemochromatosis hemochromatosis type 5
1 gene
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1 of 1 corroborated by 2+ sources
FTH1(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Hemochromatosis Hemosiderosis
1 gene
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1 of 1 corroborated by 2+ sources
CP(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Hepatic lipase deficiency Hyperemia
1 gene
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1 of 1 corroborated by 2+ sources
LIPC(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
hereditary hyperferritinemia with congenital cataracts Neurodegeneration with brain iron accumulation
1 gene
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1 of 1 corroborated by 2+ sources
FTL(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
hereditary spastic paraplegia 35 Neurodegeneration with brain iron accumulation
1 gene
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1 of 1 corroborated by 2+ sources
FA2H(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 92 →
hereditary thrombocytopenia and hematologic cancer predisposition syndrome Pancytopenia
1 gene
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1 of 1 corroborated by 2+ sources
RUNX1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Hydrops with lactic acidosis and sideroblastic anemia Perrault syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LARS2(7)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 336 →
Hemochromatosis Hypochromic anemia
1 gene
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1 of 1 corroborated by 2+ sources
SLC11A2(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Ichthyosis vulgaris Sebaceous gland disease
1 gene
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1 of 1 corroborated by 2+ sources
FLG(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 162 →
Nephrosclerosis retinal dystrophy, optic nerve edema, splenomegaly, anhidrosis, and migraine headache syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ALPK1(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Oguchi disease retinitis pigmentosa 47
1 gene
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1 of 1 corroborated by 2+ sources
SAG(7)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 151 →
Blindness Retinitis pigmentosa with choroidal involvement
1 gene
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1 of 1 corroborated by 2+ sources
RPE65(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 241 →
Blindness RHO-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RHO(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Arrhythmogenic right ventricular dysplasia Rienhoff syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TGFB3(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Hemochromatosis Right ventricle hypoplasia
1 gene
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1 of 1 corroborated by 2+ sources
BMP2(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.